Browse Element(s) Details


OsAffx.27865.1.S1_x_at

Description gb:NM_187963.1
DB_XREF= gi:34903009
TID=OsAffx.27865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1570010/11transposon protein, putative, Pong sub-class
LOC_Os06g295806/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g378504/11transposon protein, putative, Pong sub-class
LOC_Os01g745603/11transposon protein, putative, Pong sub-class
LOC_Os09g066342/11transposon protein, putative, Pong sub-class, expressed
LOC_Os08g155201/11transposon protein, putative, Pong sub-class
LOC_Os01g156801/11expressed protein
LOC_Os05g281001/11transposon protein, putative, Pong sub-class, expressed
LOC_Os11g179541/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15680Os.53832.1.S1_at10/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_at3/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_x_at2/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.27865.1.S1_x_at1/111+8817938..8819411expressed protein
LOC_Os01g15690Os.35046.2.S1_x_at11/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15690Os.35046.1.S1_at9/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15700OsAffx.27865.1.S1_x_at10/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700Os.53832.1.S1_at8/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.9725.1.S1_at3/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.27865.2.S1_at1/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15709OsAffx.11065.1.S1_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15709OsAffx.11065.1.S1_x_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15720NANA1+8837748..8843254Tobamovirus movement protein containing protein
LOC_Os01g15730NANA1+8844451..8847544hypothetical protein
LOC_Os01g15740OsAffx.22211.2.S1_s_at11/111+8850618..8853753expressed protein
LOC_Os01g15740OsAffx.22211.2.S1_at9/111+8850618..8853753expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27865.1.S1_x_at--170--1454Chr09:3144984..3145004 (21 bp)
AGAAGCATGCTTTCTTTGGTGTCGC
LOC_Os09g06634
OsAffx.27865.1.S1_x_at--746--10238Chr09:3144994..3145018 (25 bp)
TTTGGTGTCGCTGGTTCTAACAACG
LOC_Os09g06634
OsAffx.27865.1.S1_x_at--242--1153Chr01:8828100..8828124 (25 bp)
AGTCCCCTCTATTCCTTGAACAAGT
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--634--4773Chr01:8828135..8828159 (25 bp)
GCTCCTCGGGTTCATTTTTCTGTTA
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--680--10732Chr01:8828321..8828345 (25 bp)
TTGCAAGCCCGTTTCAACATTGTGC
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--532--411Chr01:8828387..8828411 (25 bp)
ATCATGTTAGCTTGTGTGATTCTCC
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--732--614Chr01:8828442..8828466 (25 bp)
ATGCGATATGTGACATTGACCTCAA
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--791--10051Chr01:8828487..8828511 (25 bp)
TAGTCCTACCTCCTGAAGTAACTTC
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--753--9813Chr01:8828505..8828751 (25 bp)
TAACTTCTGGAACATGCTCTGCTCA
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--829--9094Chr01:8828741..8828765 (25 bp)
TGCTCTGCTCAGTATGTCCAAATCA
LOC_Os01g15700
OsAffx.27865.1.S1_x_at--944--811NONE
ATGGTGCTGCACTTCTCAAAGGTTG
NONE
Target Sequence 
AGAAGCATGCTTTCTTTGGTGTCGCTGGTTCTAACAACGACATCAACGTGCCGAATCAGTCCCCTCTATTCCTTGAACAA
GTTAGAGGGGAGGCTCCTCGGGTTCATTTTTCTGTTAACGGGAATGAGTATAACAATGGGTATTACCTTGCTGATGGTAT
ATACCCATATTGGGCTAGCTTCATAAAATCTATATCACTTCCACAAACAGAGAAGCATAAATTGTTTGCTAAACGTCAAG
AAGGGGCAAGGAAAGATGTGGAGCGGGCTTTTGGAGTGTTGCAAGCCCGTTTCAACATTGTGCGCCGTCCAGCGAAGAAG
TGGAAACGGAAGAGTGTTGGGAAAATCATGTTAGCTTGTGTGATTCTCCACAATATGATTGTTGAAGATGAGAGAGAGGA
TGCGATATGTGACATTGACCTCAATAGAATTCCTAGGACATCAATAGTCCTACCTCCTGAAGTAACTTCTGGAACATGCT
CTGCTCAGTATGTCCAAATCATGGTGCTGCACTTCTCAAAGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27865.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis