Browse Element(s) Details


OsAffx.27865.2.S1_at

Description tigr:9634.m02839
TID=OsAffx.27865.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2959011/11hypothetical protein
LOC_Os01g157001/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29560NANA6+16932185..16935299hypothetical protein
LOC_Os06g29570NANA6+16937529..16940275hypothetical protein
LOC_Os06g29580OsAffx.27865.1.S1_x_at6/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580OsAffx.9725.1.S1_at5/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580Os.53832.1.S1_at4/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580Os.53011.1.S1_at2/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580Os.53011.1.S1_x_at2/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29580OsAffx.22633.1.S1_at2/116+16949362..16958200retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g29590OsAffx.27865.2.S1_at11/116+16959719..16960855hypothetical protein
LOC_Os06g29600NANA6+16974086..16978325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g29609NANA6+16980730..16981428NA
LOC_Os06g29620OsAffx.4962.1.S1_at11/116+16982851..16983159hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27865.2.S1_at--1099--2271Chr06:16960730..16960754 (25 bp)
AAATCCACCCAAAAAATCTCCATCT
LOC_Os06g29590
OsAffx.27865.2.S1_at--334--3351Chr06:16960725..16960749 (25 bp)
CACCCAAAAAATCTCCATCTACTAT
LOC_Os06g29590
OsAffx.27865.2.S1_at--874--3051Chr06:16960716..16960740 (25 bp)
AATCTCCATCTACTATTTTGCCAGC
LOC_Os06g29590
OsAffx.27865.2.S1_at--803--431Chr06:16960709..16960733 (25 bp)
ATCTACTATTTTGCCAGCCCCAAAA
LOC_Os06g29590
OsAffx.27865.2.S1_at--597--9871Chr06:16960706..16960730 (25 bp)
TACTATTTTGCCAGCCCCAAAAATC
LOC_Os06g29590
OsAffx.27865.2.S1_at--534--2971Chr06:16959967..16959991 (25 bp)
AATGGAGATGTTGCTAGGACAGAGA
LOC_Os06g29590
OsAffx.27865.2.S1_at--675--6671Chr06:16959958..16959982 (25 bp)
GTTGCTAGGACAGAGAAACGCTTGT
LOC_Os06g29590
OsAffx.27865.2.S1_at--256--2151Chr06:16959949..16959973 (25 bp)
ACAGAGAAACGCTTGTCATGGACAA
LOC_Os06g29590
OsAffx.27865.2.S1_at--782--5971Chr06:16959946..16959970 (25 bp)
GAGAAACGCTTGTCATGGACAAACG
LOC_Os06g29590
OsAffx.27865.2.S1_at--443--2752Chr01:8827568..8827592 (23 bp)
AAGACTTGAGATTGGAGTGGCCTAA
LOC_Os01g15700
OsAffx.27865.2.S1_at--513--3611Chr06:16959918..16959938 (21 bp)
CTTGAGATTGGAGTGGCCTAACTTA
LOC_Os06g29590
Target Sequence 
AAATCCACCCAAAAAATCTCCATCTACTATTTTGCCAGCCCCAAAAATCCGGGGAGTGGAATCTCGTCCTCCTGGTGGGT
TCGTTAATCTTATCAATGCCCCATCAAACCATATGCATCATGTCGCCGAAGGGAGTCCATCACAGCCTATCAATGTTGAG
AATGGAGATGTTGCTAGGACAGAGAAACGCTTGTCATGGACAAACGATGAAGACTTGAGATTGGAGTGGCCTAACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27865.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis