Browse Element(s) Details


OsAffx.9725.1.S1_at

Description gb:NM_189509.1
DB_XREF= gi:34906101
GEN=P0020E09.11
TID=OsAffx.9725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0020E09.11 (P0020E09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g745607/11transposon protein, putative, Pong sub-class
LOC_Os06g295805/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g157003/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9725.1.S1_at--607--5334Chr01:8828501..8828525 (25 bp)
GAAGTAACTTCTGGTGATAATCCAT
LOC_Os01g15700
OsAffx.9725.1.S1_at--612--7754Chr01:8828513..8828537 (25 bp)
GGTGATAATCCATGTTTTACTGATG
LOC_Os01g15700
OsAffx.9725.1.S1_at--16--9431Chr01:43508624..43508648 (25 bp)
TCGTGCTTGTTCTGTGCATACCCAA
LOC_Os01g74560
OsAffx.9725.1.S1_at--456--4931Chr01:43508620..43508644 (25 bp)
GCTTGTTCTGTGCATACCCAACTGA
LOC_Os01g74560
OsAffx.9725.1.S1_at--1039--8791Chr01:43508617..43508641 (25 bp)
TGTTCTGTGCATACCCAACTGATAA
LOC_Os01g74560
OsAffx.9725.1.S1_at--526--7331Chr01:43508611..43508635 (25 bp)
GTGCATACCCAACTGATAACTGATT
LOC_Os01g74560
OsAffx.9725.1.S1_at--890--53Chr08:23843808..23843828 (21 bp)
ATTGAGCATATTTGGCGTCGGAACA
NONE
OsAffx.9725.1.S1_at--996--3573Chr08:23843683..23843822 (25 bp)
CATATTTGGCGTCGGAACATGCTCT
NONE
OsAffx.9725.1.S1_at--171--232Chr06:16950527..16950667 (25 bp)
ATTTGGCGTCGGAACATGCTCTGCT
LOC_Os06g29580
OsAffx.9725.1.S1_at--414--3851NONE
CTGCACTTCTCAAAGAGATTTTGGT
NONE
OsAffx.9725.1.S1_at--559--8594Chr01:8829603..8829627 (25 bp)
TGGTATGTGAATATGCTATTGGCAC
LOC_Os01g15700
Target Sequence 
GAAGTAACTTCTGGTGATAATCCATGTTTTACTGATGTGCTACGTAGAAAATCTGCTATTCGTGCTTGTTCTGTGCATAC
CCAACTGATAACTGATTTAATTGAGCATATTTGGCGTCGGAACATGCTCTGCTCAGTATGTCCAAATCATGGTGCTGCAC
TTCTCAAAGAGATTTTGGTTGATATGGTATGTGAATATGCTATTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis