Browse Element(s) Details


Os.53769.1.S1_x_at

Description gb:AK099871.1
DB_XREF= gi:32985080
TID=Os.53769.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111F09, full insert sequence.
FL= gb:AK099871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g746109/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53769.1.S1_x_at--299--4831Chr01:43533359..43533383 (25 bp)
GCTCATCTCTCTTGATCACACAAAA
LOC_Os01g74610
Os.53769.1.S1_x_at--291--4411Chr01:43533290..43533314 (25 bp)
GCCACTCTGGGTGAAACCATCTTTA
LOC_Os01g74610
Os.53769.1.S1_x_at--372--1531Chr01:43532932..43532956 (25 bp)
AGCTTGTTCTTAACCTTGGCTTTGG
LOC_Os01g74610
Os.53769.1.S1_x_at--1138--6472Chr09:3319402..3319426 (25 bp)
GATACTACTTCAACTGTTCCTTCAT
NONE
Os.53769.1.S1_x_at--187--2571Chr01:43532841..43532865 (25 bp)
AACTGTTCCTTCATTGTCTAGAGCA
LOC_Os01g74610
Os.53769.1.S1_x_at--746--6671Chr01:43532813..43532837 (25 bp)
GTTGCTGCTGAGATTCTTTGCACTT
LOC_Os01g74610
Os.53769.1.S1_x_at--641--5111Chr01:43532761..43532785 (25 bp)
GCACATTCTTGCCTTCTATGATTCA
LOC_Os01g74610
Os.53769.1.S1_x_at--136--5051Chr01:43532714..43532738 (25 bp)
GCAGAGGTCAGCATATTGTCCATAT
LOC_Os01g74610
Os.53769.1.S1_x_at--650--7691Chr01:43532644..43532668 (25 bp)
GGGTACTGTTCAATGCTTGGCACAT
LOC_Os01g74610
Os.53769.1.S1_x_at--1076--1271NONE
AGATCATTTTCTACGTGCTCTTGCG
NONE
Os.53769.1.S1_x_at--226--4831NONE
GCTCTTGCGGCTTTGCTATTTAGTA
NONE
Target Sequence 
GCTCATCTCTCTTGATCACACAAAATTGCAGAGTTTTTTTTATCTTCTTTTATCTGAGGGAGAATATTGGCCACTCTGGG
TGAAACCATCTTTACAAAATGAGAATGCACCAGTGAAGATCAAATTTGAGCCAGTTATTACAAATGAAACGGGACTGAAA
CACCATCAATTTGTTGCTTTTGTTGACAAGCTTGTTCTTAACCTTGGCTTTGGTGAAGTGATCTTAGGTGTTCCAGGAAA
TACATGTTACAACACATCACAATCAATTGATACTACTTCAACTGTTCCTTCATTGTCTAGAGCATGGGTTGCTGCTGAGA
TTCTTTGCACTTGGAAATGGAAAGGGGGGAGTGTATTCAGCACATTCTTGCCTTCTATGATTCAGCACTTGAAAATGGAA
TCATGTGCAGAGGTCAGCATATTGTCCATATTGCTTGACACATTGTTGGAAGGAGCTTTTCATGAGTGTAACCAGTGGGT
ACTGTTCAATGCTTGGCACATTTCTGACAATGAGATTGAGAAAATTCAAGATCATTTTCTACGTGCTCTTGCGGCTTTGC
TATTTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53769.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis