Browse Element(s) Details


Os.6173.1.S1_at

Description gb:AK065652.1
DB_XREF= gi:32975670
TID=Os.6173.1
CNT=60
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative plastidic cysteine synthase 1 (P0020E09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035B06, full insert sequence.
FL= gb:AK099217.1 gb:AK065007.1 gb:AK065652.1 gb:AK104704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7465011/11Cysteine synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74660Os.5806.1.S1_at11/111+43571066..43572250cinnamoyl-CoA reductase family, putative, expressed
LOC_Os01g74670OsAffx.11849.1.S1_s_at11/111+43573913..43577558expressed protein
LOC_Os01g74670Os.39255.1.A1_at9/111+43573913..43577558expressed protein
LOC_Os01g74670OsAffx.11849.1.S1_at7/111+43573913..43577558expressed protein
LOC_Os01g74680NANA1+43584468..43590145retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6173.1.S1_at--620--3251Chr01:43559198..43559222 (25 bp)
CAACCTGAACCATGAGCCTAACTTC
LOC_Os01g74650
Os.6173.1.S1_at--1--1691Chr01:43559184..43559208 (25 bp)
AGCCTAACTTCAGTGTTCACAACAT
LOC_Os01g74650
Os.6173.1.S1_at--857--6831Chr01:43559152..43559176 (25 bp)
GTTTCTGAGATTTCTGGCCATTAGT
LOC_Os01g74650
Os.6173.1.S1_at--1023--5331Chr01:43559114..43559138 (25 bp)
GAAGTATCATACCACTCCATAGCTG
LOC_Os01g74650
Os.6173.1.S1_at--950--4351Chr01:43559103..43559127 (25 bp)
CCACTCCATAGCTGTTTGTTCGATA
LOC_Os01g74650
Os.6173.1.S1_at--150--2491Chr01:43559073..43559097 (25 bp)
AACAGTTACCTTTGCACTTATAATG
LOC_Os01g74650
Os.6173.1.S1_at--632--7691Chr01:43559038..43559062 (25 bp)
GGGTACTGTGAAATTTCTCTGAACA
LOC_Os01g74650
Os.6173.1.S1_at--974--8971Chr01:43559019..43559043 (25 bp)
TGAACATCTTCTACTCTTCTCTTTT
LOC_Os01g74650
Os.6173.1.S1_at--1092--2451Chr01:43558924..43558948 (25 bp)
AACAAATGTTTCGAAGAGCCGTGAA
LOC_Os01g74650
Os.6173.1.S1_at--566--4891Chr01:43558846..43558870 (25 bp)
GCTTTTTTGTCGAGAGCTGTCACTC
LOC_Os01g74650
Os.6173.1.S1_at--955--5891Chr01:43558833..43558857 (25 bp)
GAGCTGTCACTCGAGGTGTGGTATT
LOC_Os01g74650
Target Sequence 
CAACCTGAACCATGAGCCTAACTTCAGTGTTCACAACATCATAATTGTTTCTGAGATTTCTGGCCATTAGTTTTTTTTTT
CTGAGAAGTATCATACCACTCCATAGCTGTTTGTTCGATAAATAAAACAGTTACCTTTGCACTTATAATGAGGCTTGTGA
GGGTACTGTGAAATTTCTCTGAACATCTTCTACTCTTCTCTTTTATCCTTAAATCAATCTGGGAGCAGTTTGTAATACAT
ACGTAAATTTAAAGCTGGGTGTTTGGTAATTGTAAACAAATGTTTCGAAGAGCCGTGAAACATTATCAATTAGCATGAAG
CACTTTAAAAGTGNCTTTCCGGATGCTGNNGTGCTTTTTTGTCGAGAGCTGTCACTCGAGGTGTGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis