Browse Element(s) Details


OsAffx.11849.1.S1_at

Description tigr:9629.m07409
TID=OsAffx.11849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g746707/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74660Os.5806.1.S1_at11/111+43571066..43572250cinnamoyl-CoA reductase family, putative, expressed
LOC_Os01g74670OsAffx.11849.1.S1_s_at11/111+43573913..43577558expressed protein
LOC_Os01g74670Os.39255.1.A1_at9/111+43573913..43577558expressed protein
LOC_Os01g74670OsAffx.11849.1.S1_at7/111+43573913..43577558expressed protein
LOC_Os01g74680NANA1+43584468..43590145retrotransposon protein, putative, unclassified
LOC_Os01g74690Os.31312.5.S1_x_at5/111+43591254..43594513retrotransposon protein, putative, unclassified
LOC_Os01g74690Os.31312.2.S1_x_at4/111+43591254..43594513retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11849.1.S1_at--524--7711NONE
GGGTGTCAAGGACTCAAGTTGTAAC
NONE
OsAffx.11849.1.S1_at--374--8731NONE
TGTCAAGGACTCAAGTTGTAACCAT
NONE
OsAffx.11849.1.S1_at--111--2891NONE
AAGGACTCAAGTTGTAACCATGTTG
NONE
OsAffx.11849.1.S1_at--1100--9791Chr01:43574143..43574210 (25 bp)
TAACCAGCTTGTGAGTGACTTAGAA
LOC_Os01g74670
OsAffx.11849.1.S1_at--203--4352Chr04:26691636..26691703 (25 bp)
CCAGCTTGTGAGTGACTTAGAACTA
NONE
OsAffx.11849.1.S1_at--847--4931Chr04:26691639..26691706 (25 bp)
GCTTGTGAGTGACTTAGAACTAGAA
NONE
OsAffx.11849.1.S1_at--611--10453Chr04:26691695..26691717 (23 bp)
TTAGAACTAGAAGTTTGGGCATTCT
NONE
OsAffx.11849.1.S1_at--703--8293Chr04:26691710..26691738 (25 bp)
TGGGCATTCTTAGAAACCCGTGGAG
NONE
OsAffx.11849.1.S1_at--496--8293Chr04:26691712..26691740 (25 bp)
GGCATTCTTAGAAACCCGTGGAGAT
NONE
OsAffx.11849.1.S1_at--442--4491Chr01:43573964..43574068 (25 bp)
GCCGATGTTGGTCAGTAAAAGTAGT
LOC_Os01g74670
OsAffx.11849.1.S1_at--51--8771Chr01:43573959..43574063 (25 bp)
TGTTGGTCAGTAAAAGTAGTGGTTC
LOC_Os01g74670
Target Sequence 
GGGTGTCAAGGACTCAAGTTGTAACCATGTTGATTTTGCCGTTCGGGTTGAGCGCCAGCCACAAATGCGACTCTGGTCTG
CAGGGATGACGCGATGTGTCCGTGTCTGTGGAGGCAACAGAAGGATCGCCGGACAGAGTGAAATTGCTAACCAGCTTGTG
AGTGACTTAGAACTAGAAGTTTGGGCATTCTTAGAAACCCGTGGAGATGCAGCTTTGATTCTGCGAGGCCTTCCTACTTC
TACTGTGCCGATGTTGGTCAGTAAAAGTAGTGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis