Browse Element(s) Details


Os.39255.1.A1_at

Description gb:NM_189521.1
DB_XREF= gi:34906125
GEN=P0020E09.23
TID=Os.39255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.23 (P0020E09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0020E09.23 (P0020E09.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g746709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74660Os.5806.1.S1_at11/111+43571066..43572250cinnamoyl-CoA reductase family, putative, expressed
LOC_Os01g74670OsAffx.11849.1.S1_s_at11/111+43573913..43577558expressed protein
LOC_Os01g74670Os.39255.1.A1_at9/111+43573913..43577558expressed protein
LOC_Os01g74670OsAffx.11849.1.S1_at7/111+43573913..43577558expressed protein
LOC_Os01g74680NANA1+43584468..43590145retrotransposon protein, putative, unclassified
LOC_Os01g74690Os.31312.5.S1_x_at5/111+43591254..43594513retrotransposon protein, putative, unclassified
LOC_Os01g74690Os.31312.2.S1_x_at4/111+43591254..43594513retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39255.1.A1_at--1091--8711Chr01:43575546..43575570 (25 bp)
TGTCAGTGCACGTTAGGAGAGCCCT
LOC_Os01g74670
Os.39255.1.A1_at--863--5871Chr01:43575528..43575552 (25 bp)
GAGCCCTGTGGATGAAATCGTCGCA
LOC_Os01g74670
Os.39255.1.A1_at--824--2271Chr01:43575514..43575538 (25 bp)
AAATCGTCGCAGCAACGCAGCAGCT
LOC_Os01g74670
Os.39255.1.A1_at--635--7211Chr01:43575486..43575510 (25 bp)
GTCGATTTCGTCTATTTCTACTGCA
LOC_Os01g74670
Os.39255.1.A1_at--962--10571Chr01:43575471..43575495 (25 bp)
TTCTACTGCACGATTGTATCCTGAA
LOC_Os01g74670
Os.39255.1.A1_at--228--6891Chr01:43575456..43575480 (25 bp)
GTATCCTGAAGTTTGCTACCTTTAC
LOC_Os01g74670
Os.39255.1.A1_at--177--991Chr01:43575104..43575447 (25 bp)
AGGATGGTTTTATCGCCATCCGCCA
LOC_Os01g74670
Os.39255.1.A1_at--438--6413Chr04:26690990..26691017 (25 bp)
GATCTCCTCTGTGCCCAAGGATTTT
NONE
Os.39255.1.A1_at--1116--131Chr01:43574561..43574585 (25 bp)
ATTACTGTACTCTATTTTGCTACGA
LOC_Os01g74670
Os.39255.1.A1_at--1050--2631NONE
AACCAGCTTGTGAGGCCAGGTGATC
NONE
Os.39255.1.A1_at--937--6551Chr01:43572420..43572444 (25 bp)
GATTGAAGTTCTATCGTAAACCAGA
NONE
Target Sequence 
TGTCAGTGCACGTTAGGAGAGCCCTGTGGATGAAATCGTCGCAGCAACGCAGCAGCTCCTGTCGATTTCGTCTATTTCTA
CTGCACGATTGTATCCTGAAGTTTGCTACCTTTACCTTCCAAAAGGATGGTTTTATCGCCATCCGCCATCGCGACGCCAC
CTCCTCTCTCTCACATCGTTCCATCGCCCTATCCAGCGCCATCCGCCATTGCGACGCCGCCACGCCAACAACGGCCATCC
CTCTCCCATCGGCTGGCGTCACCAACATCGTCGATCTCCTCCGCGCCTCCGCCCGAGCCGATCTCTCCCCGTCGATCTCT
CCCGTCCGCATCGTCACCGACGGCCACCTTTGCCGATCTCCTCTGTGCCCAAGGATTTTATTACTGTACTCTATTTTGCT
ACGAGTTGCAAAACAGGATGGTGATACAGGACAGAGTGAAATTGCTAACCAGCTTGTGAGGCCAGGTGATCAAATGAAAA
AGGGAAATGCTTTGAGATTGAAGTTCTATCGTAAACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39255.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis