Browse Element(s) Details


Os.5806.1.S1_at

Description gb:AK062411.1
DB_XREF= gi:32972429
TID=Os.5806.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamoyl-CoA reductase (P0020E09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F01, full insert sequence.
FL= gb:AK062411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7466011/11cinnamoyl-CoA reductase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74660Os.5806.1.S1_at11/111+43571066..43572250cinnamoyl-CoA reductase family, putative, expressed
LOC_Os01g74670OsAffx.11849.1.S1_s_at11/111+43573913..43577558expressed protein
LOC_Os01g74670Os.39255.1.A1_at9/111+43573913..43577558expressed protein
LOC_Os01g74670OsAffx.11849.1.S1_at7/111+43573913..43577558expressed protein
LOC_Os01g74680NANA1+43584468..43590145retrotransposon protein, putative, unclassified
LOC_Os01g74690Os.31312.5.S1_x_at5/111+43591254..43594513retrotransposon protein, putative, unclassified
LOC_Os01g74690Os.31312.2.S1_x_at4/111+43591254..43594513retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5806.1.S1_at--945--9111Chr01:43571735..43571759 (25 bp)
TGCTGCAGCGCCTCTTGCAGGGCTC
LOC_Os01g74660
Os.5806.1.S1_at--14--10691Chr01:43571749..43571773 (25 bp)
TTGCAGGGCTCCACGGACGACCAGG
LOC_Os01g74660
Os.5806.1.S1_at--266--9191Chr01:43571758..43571782 (25 bp)
TCCACGGACGACCAGGCGGACTACT
LOC_Os01g74660
Os.5806.1.S1_at--105--7651Chr01:43571854..43571878 (25 bp)
GGGAGGTACCTCTGCACCAACGGCA
LOC_Os01g74660
Os.5806.1.S1_at--121--1711Chr01:43571869..43571893 (25 bp)
ACCAACGGCATCTACCAGTTCAGCG
LOC_Os01g74660
Os.5806.1.S1_at--763--1211Chr01:43571885..43571909 (25 bp)
AGTTCAGCGACTTCGCACGGCTAGC
LOC_Os01g74660
Os.5806.1.S1_at--985--9991Chr01:43571906..43571930 (25 bp)
TAGCTGCCAGGATCTGCCCCGCGTA
LOC_Os01g74660
Os.5806.1.S1_at--347--7631Chr01:43571959..43571983 (25 bp)
GGGACTACACAACCGTGGCTCGTGC
LOC_Os01g74660
Os.5806.1.S1_at--524--6091Chr01:43572072..43572096 (25 bp)
GAGTCTCACCGATAAATGCTTCCTT
LOC_Os01g74660
Os.5806.1.S1_at--513--631Chr01:43572087..43572111 (25 bp)
ATGCTTCCTTCCTTGATACTCATAA
LOC_Os01g74660
Os.5806.1.S1_at--938--8031Chr01:43572129..43572153 (25 bp)
GGAGTAGTATATTGTTTCCTTCATT
LOC_Os01g74660
Target Sequence 
TGCTGCAGCGCCTCTTGCAGGGCTCCACGGACGACCAGGCGGACTACTGGCTCGGCGCCGTCCACGTCCGCGACGTCGCC
GCCGCCCACCTCCTGCTGCTCGAGGCTCCCACCGTCTCCGGGAGGTACCTCTGCACCAACGGCATCTACCAGTTCAGCGA
CTTCGCACGGCTAGCTGCCAGGATCTGCCCCGCGTACGCCCACGCCATCCACCGCTTCGAGGAGGGGACTACACAACCGT
GGCTCGTGCCGCGCGACGCCCGTGACGCAGCACGCCGGCTCCTNGACCTCGGCCTCGTCCTCACTCCCCTCGAGGAGGCC
ATCAAGGACGCGGAGAAGAGTCTCACCGATAAATGCTTCCTTCCTTGATACTCATAATAATTACTGTACCTATAGGAGTA
GTATATTGTTTCCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis