Browse Element(s) Details


Os.38089.3.S1_at

Description gb:NM_189515.1
DB_XREF= gi:34906113
GEN=P0020E09.17
TID=Os.38089.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1166B08.16 (B1166B08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0020E09.17 (P0020E09.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7462010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38089.3.S1_at--403--10831Chr01:43544360..43544384 (25 bp)
TTGGGAAGAAGGTACAGCCACCGCT
LOC_Os01g74620
Os.38089.3.S1_at--807--5371Chr01:43544364..43544388 (25 bp)
GAAGAAGGTACAGCCACCGCTACAT
LOC_Os01g74620
Os.38089.3.S1_at--845--4471Chr01:43544423..43544447 (25 bp)
GCCTGTTGCACCTGCGCCTTCTGGG
LOC_Os01g74620
Os.38089.3.S1_at--622--1831Chr01:43544460..43544484 (25 bp)
ACGCGCAGGCTGTCAAGCTGCAGGA
LOC_Os01g74620
Os.38089.3.S1_at--578--9051Chr01:43544478..43544502 (25 bp)
TGCAGGAGCTCGTCTGGGCCGAGAA
LOC_Os01g74620
Os.38089.3.S1_at--897--5071Chr01:43544580..43544604 (25 bp)
GCACCTCATCTGCTTCCATAAACAT
LOC_Os01g74620
Os.38089.3.S1_at--400--3831Chr01:43544589..43544613 (25 bp)
CTGCTTCCATAAACATGACCACCAT
LOC_Os01g74620
Os.38089.3.S1_at--225--5851Chr01:43544605..43544629 (25 bp)
GACCACCATGATCAGCTTAAACAAT
LOC_Os01g74620
Os.38089.3.S1_at--77--9831Chr01:43544622..43544646 (25 bp)
TAAACAATGGCTTCCACTCGACTAG
LOC_Os01g74620
Os.38089.3.S1_at--427--8491Chr01:43544629..43544653 (25 bp)
TGGCTTCCACTCGACTAGACCTGTA
LOC_Os01g74620
Os.38089.3.S1_at--57--10031NONE
TAGACCTGTACTCGCGCGCGACGTG
NONE
Target Sequence 
TTGGGAAGAAGGTACAGCCACCGCTACATCCACCGGGCCGGCACCAACCTCACGCCCTCCGCCGCCTGTTGCACCTGCGC
CTTCTGGGGCTACTACCCCGACGCGCAGGCTGTCAAGCTGCAGGAGCTCGTCTGGGCCGAGAAGGGCCCTGCACCACGCC
GCCGACCGCGCCAATCCTCCTCCGCCTCCATCTCTACCTCCACCTCCACCTCCTACACTGGCACCTCATCTGCTTCCATA
AACATGACCACCATGATCAGCTTAAACAATGGCTTCCACTCGACTAGACCTGTACTCGCGCGCGACGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38089.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis