Browse Element(s) Details


Os.19202.1.S1_a_at

Description gb:AK060263.1
DB_XREF= gi:32970281
TID=Os.19202.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.16 (P0020E09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-B04, full insert sequence.
FL= gb:AK060263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7461011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19202.1.S1_a_at--63--2931Chr01:43530101..43530125 (25 bp)
AAGGACTCTCTGTATGCTGATGATA
LOC_Os01g74610
Os.19202.1.S1_a_at--307--3451Chr01:43530070..43530094 (25 bp)
CAGTTAGTGTTAACCGCTCGGCGTA
LOC_Os01g74610
Os.19202.1.S1_a_at--396--3771Chr01:43530054..43530078 (25 bp)
CTCGGCGTACGAAATTGTTGCTACA
LOC_Os01g74610
Os.19202.1.S1_a_at--1066--8211Chr01:43530011..43530035 (25 bp)
GGAATTGATCTTGTCATACGCCTCC
LOC_Os01g74610
Os.19202.1.S1_a_at--526--9651Chr01:43529898..43529920 (23 bp)
TCACGGCATTCGTACGCAACCAGAA
LOC_Os01g74610
Os.19202.1.S1_a_at--838--5031Chr01:43529776..43529800 (25 bp)
GCAGAGGCGATCCACACTTGGAAAA
LOC_Os01g74610
Os.19202.1.S1_a_at--643--8011Chr01:43529723..43529747 (25 bp)
GGAGGAATGCCCAATCTGTTACAGC
LOC_Os01g74610
Os.19202.1.S1_a_at--56--6771Chr01:43529706..43529730 (25 bp)
GTTACAGCATTCTGCACACGAGCAA
LOC_Os01g74610
Os.19202.1.S1_a_at--810--351Chr01:43529643..43529667 (25 bp)
ATAAGTTTCATGGTGCTTGCCTCTA
LOC_Os01g74610
Os.19202.1.S1_a_at--110--4931Chr01:43529629..43529653 (25 bp)
GCTTGCCTCTACAAGTGGTTCTCAA
LOC_Os01g74610
Os.19202.1.S1_a_at--109--2271Chr01:43529596..43529620 (25 bp)
AAATCAACGTGTCCCTTGTGCCAAA
LOC_Os01g74610
Target Sequence 
AAGGACTCTCTGTATGCTGATGATAATTTCTCAGTTAGTGTTAACCGCTCGGCGTACGAAATTGTTGCTACATACAAGAA
GGAGGAGACAGGAATTGATCTTGTCATACGCCTCCCGAGCTGTTACCCTCTGCGCCATGTGGATGTTGAATGTACCAGAA
GTTTGGGCATCAGTGAAGTGAAGTGCAGAAAATGGTTGCTTTCTCTCACGGCATTCGTACGCAACCAGAACGGCGCAATA
GCAGAGGCGATCCACACTTGGAAAAGCAATTTTGACAAGGAGTTTGAGGGNGTGGAGGAATGCCCAATCTGTTACAGCAT
TCTGCACACGAGCAACCACAGCCTTCCCCGGCTGGCTTGCAAGACGTGCAGGCATAAGTTTCATGGTGCTTGCCTCTACA
AGTGGTTCTCAACATCCAACAAATCAACGTGTCCCTTGTGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19202.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis