Browse Element(s) Details


Os.33222.1.S1_at

Description gb:AK101308.1
DB_XREF= gi:32986517
TID=Os.33222.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.15 (P0020E09.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033M22, full insert sequence.
FL= gb:AK101308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7460011/11Vegetative storage protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33222.1.S1_at--35--9871Chr01:43524927..43524951 (25 bp)
TACAGCGCTGCTGGGAGATTCGATG
LOC_Os01g74600
Os.33222.1.S1_at--596--6791Chr01:43524988..43525012 (25 bp)
GTTTTAAGAAGAGTCCAGGCTGCAG
LOC_Os01g74600
Os.33222.1.S1_at--673--9831Chr01:43525024..43525048 (25 bp)
TAAACGGCTCCCTACATGCATTTGT
LOC_Os01g74600
Os.33222.1.S1_at--126--3071Chr01:43525060..43525084 (25 bp)
AATCTCATCCACAATCACCTGAAAT
LOC_Os01g74600
Os.33222.1.S1_at--1056--9751Chr01:43525118..43525142 (25 bp)
TAAGAAACTGGGTTACCAGCCCGAT
LOC_Os01g74600
Os.33222.1.S1_at--720--4351Chr01:43525133..43525157 (25 bp)
CCAGCCCGATACCAGTTTTGTTTTG
LOC_Os01g74600
Os.33222.1.S1_at--459--8051Chr01:43525181..43525205 (25 bp)
GGAGAAGGCACTCATCTGTCATAGT
LOC_Os01g74600
Os.33222.1.S1_at--381--311Chr01:43525218..43525242 (25 bp)
ATAGCCTATGGTATCCTGAGTCTTA
LOC_Os01g74600
Os.33222.1.S1_at--622--6751Chr01:43525263..43525287 (25 bp)
GTTACTAAGAATCTCCGCGTTTGTG
LOC_Os01g74600
Os.33222.1.S1_at--100--2191Chr01:43525412..43525436 (25 bp)
ACACAACGCGTGGTTCAGCTACTGA
LOC_Os01g74600
Os.33222.1.S1_at--347--1571Chr01:43525428..43525452 (25 bp)
AGCTACTGAGCTACGGATTACAATC
LOC_Os01g74600
Target Sequence 
TACAGCGCTGCTGGGAGATTCGATGAGGCGGCNGAGGTTCGGATAATACAGAAGGTACAGGGTTTTAAGAAGAGTCCAGG
CTGCAGTTGGATTGAGATAAACGGCTCCCTACATGCATTTGTTGGGGGAGACCAATCTCATCCACAATCACCTGAAATAT
ATCGAGAGCTGGATAACATTCTAGTAGGTATTAAGAAACTGGGTTACCAGCCCGATACCAGTTTTGTTTTGCAAGATCTG
GAGGAAGAGGAAAAGGAGAAGGCACTCATCTGTCATAGTGANAAGCTAGCNATAGCCTATGGTATCCTGAGTCTTAGTGA
AGATAAGACCATTTTTGTTACTAAGAATCTCCGCGTTTGTGGGGACTGTCATACTGTAATCAAGCACATAAGCTTANTGA
AGCGCAGGGCTATCATTGTNCGAGATGCTAATAGGTTNCATCATTTCAAGAATGGGCAATGCAGCTGTGGAGATTTTTGG
TGACAACACAACGCGTGGTTCAGCTACTGAGCTACGGATTACAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis