Browse Element(s) Details


Os.42941.1.S1_s_at

Description gb:NM_189506.1
DB_XREF= gi:34906095
GEN=P0020E09.8
TID=Os.42941.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.8 (P0020E09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0020E09.8 (P0020E09.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7454011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein
LOC_Os01g74580Os.38811.1.S1_a_at11/111+43516019..43520381DnaJ domain containing protein, expressed
LOC_Os01g74590Os.16203.1.S1_at11/111+43520874..43521717Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009735biological_processresponse to cytokinin stimulus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42941.1.S1_s_at--87--3811Chr01:43499830..43499854 (25 bp)
CTCCTCCCCGGTGGACAAGGTGGAT
LOC_Os01g74540
Os.42941.1.S1_s_at--104--2891Chr01:43499814..43499838 (25 bp)
AAGGTGGATCCCGACGAGTGCAACG
LOC_Os01g74540
Os.42941.1.S1_s_at--668--4091Chr01:43499803..43499827 (25 bp)
CGACGAGTGCAACGGCTCTAAGGCT
LOC_Os01g74540
Os.42941.1.S1_s_at--500--1931Chr01:43499792..43499816 (25 bp)
ACGGCTCTAAGGCTTGCGCTGACTG
LOC_Os01g74540
Os.42941.1.S1_s_at--847--9151Chr01:43499778..43499802 (25 bp)
TGCGCTGACTGCCACACTACCAAGA
LOC_Os01g74540
Os.42941.1.S1_s_at--51--2031Chr01:43499763..43499787 (25 bp)
ACTACCAAGACTCCGCTATGGCGAG
LOC_Os01g74540
Os.42941.1.S1_s_at--262--3951Chr01:43499586..43499761 (25 bp)
CGGACCCGGAGGACCCAAGTCGCTG
LOC_Os01g74540
Os.42941.1.S1_s_at--1017--971Chr01:43499425..43499449 (25 bp)
AGGAGGTCACCATGGAGCTCCACAC
LOC_Os01g74540
Os.42941.1.S1_s_at--926--2171Chr01:43499404..43499428 (25 bp)
ACACGGTGGGCTTCCGCAGCAAGGA
LOC_Os01g74540
Os.42941.1.S1_s_at--202--5191Chr01:43499386..43499410 (25 bp)
GCAAGGACGCTGCTGTGTTCAAGCA
LOC_Os01g74540
Os.42941.1.S1_s_at--582--6351Chr01:43499352..43499376 (25 bp)
GATGCGCCGCAGGAAATGCCTTGGC
LOC_Os01g74540
Target Sequence 
CTCCTCCCCGGTGGACAAGGTGGATCCCGACGAGTGCAACGGCTCTAAGGCTTGCGCTGACTGCCACACTACCAAGACTC
CGCTATGGCGAGGCGGACCCGGAGGACCCAAGTCGCTGTGCAACGCATGCGGGATCCGGTATCGGAAGAGGCGGCGGGCG
GCGCTCGGCCTGGACTCTTCCGCCACCGCCACCGCCACCGACGGAGCGGAGCAGCAGAAGAAGACTAAGGCCAAGAAGNA
AAAGGCACAGGAGGAGGAGGTCACCATGGAGCTCCACACGGTGGGCTTCCGCAGCAAGGACGCTGCTGTGTTCAAGCAGC
GCCGGCGGATGCGCCGCAGGAAATGCCTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis