Browse Element(s) Details


Os.33444.1.A1_at

Description gb:AK100555.1
DB_XREF= gi:32985764
TID=Os.33444.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0020E09.6 (P0020E09.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103M06, full insert sequence.
FL= gb:AK100555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7451011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33444.1.A1_at--835--2671Chr01:43484554..43484578 (25 bp)
AAGCTGCAACCGAGGTAGCTCCTCT
LOC_Os01g74510
Os.33444.1.A1_at--999--6492Chr01:43484616..43484640 (25 bp)
GATTTGGACTTCTTTCCCAACTGTA
LOC_Os01g74510
Os.33444.1.A1_at--733--9331Chr01:43484644..43484668 (25 bp)
TCGCTCATTCCTTGTAACATCTCAA
LOC_Os01g74510
Os.33444.1.A1_at--699--7691Chr01:43484686..43484710 (25 bp)
GGGTCTTGATAGATAACGACTGCAA
LOC_Os01g74510
Os.33444.1.A1_at--947--2971Chr01:43484727..43484751 (25 bp)
AATGGGCTATACGTACAATCTGTGT
LOC_Os01g74510
Os.33444.1.A1_at--825--7431Chr01:43484748..43484772 (25 bp)
GTGTATATGACTCATGTCCGACTCA
LOC_Os01g74510
Os.33444.1.A1_at--958--752Chr01:43484761..43484785 (25 bp)
ATGTCCGACTCAACTATTGTTTTAC
LOC_Os01g74510
Os.33444.1.A1_at--894--31Chr01:43484776..43484800 (25 bp)
ATTGTTTTACTAGCTCCTATAGAGA
LOC_Os01g74510
Os.33444.1.A1_at--739--7951Chr01:43484815..43484839 (25 bp)
GGATCAACTTCCCATAACTATTATT
LOC_Os01g74510
Os.33444.1.A1_at--607--10212Chr01:43484833..43484857 (25 bp)
TATTATTTTCCTATCTCCATAGAGA
LOC_Os01g74510
Os.33444.1.A1_at--169--2332Chr01:43484909..43484933 (25 bp)
AAAGACGCATAACTATTGTTTTCCT
LOC_Os01g74510
Target Sequence 
AAGCTGCAACCGAGGTAGCTCCTCTCTTCTCTACTTCCACCATTGCATTCCGCCCTTCCTTCGATTTGGACTTCTTTCCC
AACTGTAACCTCGCTCATTCCTTGTAACATCTCAATTTTGGACATGCATAATGGGTCTTGATAGATAACGACTGCAATTA
GTTNTACTTCTGAAATGGGCTATACGTACAATCTGTGTATATGACTCATGTCCGACTCAACTATTGTTTTACTAGCTCCT
ATAGAGATAAGCTGATCCTAAGGATCAACTTCCCATAACTATTATTTTCCTATCTCCATAGAGATAAGCTGATTGTAAGG
ATTGATGGATGAGAAGTAGTTGGATCAGTCTTATAAAAGACGCATAACTATTGTTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33444.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis