Browse Element(s) Details


Os.18214.1.S1_at

Description gb:AK061022.1
DB_XREF= gi:32971040
TID=Os.18214.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative legumin-like protein (P0459B04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D01, full insert sequence.
FL= gb:AK061022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7448011/11legumin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0042735cellular_componentprotein body
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18214.1.S1_at--840--8011Chr01:43463485..43463509 (25 bp)
GGAGGACCTCCGTCTGGAAGGCCAT
LOC_Os01g74480
Os.18214.1.S1_at--645--8051Chr01:43463421..43463445 (25 bp)
GGAGATGGAGAACCTCTTCCGCTCC
LOC_Os01g74480
Os.18214.1.S1_at--788--2791Chr01:43463396..43463420 (25 bp)
AAGAGGCTCGACTCCGAGATCTTCT
LOC_Os01g74480
Os.18214.1.S1_at--54--851Chr01:43463346..43463370 (25 bp)
ATGGACAATATCCATCCTCCATCTC
LOC_Os01g74480
Os.18214.1.S1_at--185--9251Chr01:43463283..43463307 (25 bp)
TCCTTCCTTTTATTTAGATCATGTC
LOC_Os01g74480
Os.18214.1.S1_at--639--6931Chr01:43463261..43463285 (25 bp)
GTCAGTCGTTAGATTTAATTCGGTT
LOC_Os01g74480
Os.18214.1.S1_at--511--7891Chr01:43463240..43463264 (25 bp)
GGTTCTTTGGTTGTTAGCATCACCT
LOC_Os01g74480
Os.18214.1.S1_at--154--1491Chr01:43463225..43463249 (25 bp)
AGCATCACCTACCTCTTTTATTTGA
LOC_Os01g74480
Os.18214.1.S1_at--1137--1131Chr01:43463164..43463188 (25 bp)
AGTCCTATCATGCATATGTCCTCTT
LOC_Os01g74480
Os.18214.1.S1_at--909--2831Chr01:43463116..43463140 (25 bp)
AAGTCAACAGCCGTTCGATTCGATC
LOC_Os01g74480
Os.18214.1.S1_at--27--6591Chr01:43463100..43463124 (25 bp)
GATTCGATCTGCCATGCATGAACGA
LOC_Os01g74480
Target Sequence 
GGAGGACCTCCGTCTGGAAGGCCATCTCCCCCGCCGTGCTCCAGGCCTCCTTCAACACCACCCCGGAGATGGAGAACCTC
TTCCGCTCCAAGAGGCTCGACTCCGAGATCTTCTTCGCCCCCAATTCGAATTCGATTTGATGGACAATATCCATCCTCCA
TCTCCAGCACCTGCCCACCTAGCAGCATCAGCAGATTCAGCTTCCTTCCTTTTATTTAGATCATGTCAGTCGTTAGATTT
AATTCGGTTCTTTGGTTGTTAGCATCACCTACCTCTTTTATTTGATAATAACAATAAGCTCGAGATGGAGTGGAATTTGA
TAGTCCTATCATGCATATGTCCTCTTTATTTTTTTAAAACTCTGTTTTAAAGTCAACAGCCGTTCGATTCGATCTGCCAT
GCATGAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis