Browse Element(s) Details


Os.7475.1.S1_at

Description gb:AB114829.1
DB_XREF= gi:32879771
GEN=OsTIP1
TID=Os.7475.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7475 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsTIP1 mRNA for tonoplast intrinsic protein, complete cds.
PROD=tonoplast intrinsic protein
FL= gb:AK111747.1 gb:AB114829.1 gb:AK111768.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7445011/11Aquaporin TIP1.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0018987biological_processosmoregulation
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015200molecular_functionmethylammonium transporter activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7475.1.S1_at--177--7471Chr01:43443478..43443502 (25 bp)
GTGGGCGCCTGGAACGCGGTGGTGT
LOC_Os01g74450
Os.7475.1.S1_at--268--4411Chr01:43443412..43443436 (25 bp)
GCCACCGCGGTGGATCCCAAGAAGG
LOC_Os01g74450
Os.7475.1.S1_at--611--4231Chr01:43443273..43443297 (25 bp)
CCGTCGTCACCGGAGTCTGGGACAA
LOC_Os01g74450
Os.7475.1.S1_at--105--6111Chr01:43443261..43443285 (25 bp)
GAGTCTGGGACAACCACTGGGTCTA
LOC_Os01g74450
Os.7475.1.S1_at--760--7171Chr01:43443259..43443283 (25 bp)
GTCTGGGACAACCACTGGGTCTACT
LOC_Os01g74450
Os.7475.1.S1_at--660--3451Chr01:43443107..43443131 (25 bp)
CAGTCTCAATAATCGAATTCGTCCC
LOC_Os01g74450
Os.7475.1.S1_at--887--4191Chr01:43443083..43443107 (25 bp)
CCCGTCTCGATCCATATATAGCTAG
LOC_Os01g74450
Os.7475.1.S1_at--796--133Chr05:2039538..2039717 (25 bp)
ATTAATTACTCCATGCAGCTGCTAC
NONE
Os.7475.1.S1_at--623--651Chr01:43443043..43443067 (25 bp)
ATGCAGCTGCTACCTGTGTCGTCTT
LOC_Os01g74450
Os.7475.1.S1_at--492--1591Chr01:43443039..43443063 (25 bp)
AGCTGCTACCTGTGTCGTCTTCCAC
LOC_Os01g74450
Os.7475.1.S1_at--1014--9551Chr01:43442992..43443016 (25 bp)
TCTTCTGTACAAACAAATTACGTAA
LOC_Os01g74450
Target Sequence 
GTGGGCGCCTGGAACGCGGTGGTGTTCGAGATCGTCATGACCTTCGGCCTCGTCTACACCGTGTACGCCACCGCGGTGGA
TCCCAAGAAGGGCGACCTCGGTGTCATCGCCCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGCCGGCGGCG
CCTTCGACGGCGCCTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCGTCGTCACCGGAGTCTGGGACAACCACTGGGTC
TACTGGCTCGGCCCCTTCGTCGGCGCCGCCATCGCCGCGCTCATCTACGACATCATCTTCATCGGCCAGCGCCCGCACGA
CCAGCTGCCCACCGCCGANTACTGATCATATCATATCATATCGTCTGCNCCCAGTCTCAATAATCGAATTCGTCCCCCGT
CTCGATCCATATATAGCTAGAATATTAATTACTCCATGCAGCTGCTACCTGTGTCGTCTTCCACCCCCAATCAATTACNA
CTCTCTTCTTCTGTACAAACAAATTACGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis