Browse Element(s) Details


Os.28573.1.S1_at

Description gb:AK111354.1
DB_XREF= gi:32996563
TID=Os.28573.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0459B04.21 (P0459B04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-G11, full insert sequence.
FL= gb:AK111354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7449010/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28573.1.S1_at--590--2951Chr01:43468939..43468963 (25 bp)
AAGGCGAACAAGAGCAAGCAGCAGC
LOC_Os01g74490
Os.28573.1.S1_at--139--3411Chr01:43468957..43468981 (25 bp)
CAGCAGCTGGTTAGCCCTGCAAGCT
LOC_Os01g74490
Os.28573.1.S1_at--999--8571Chr01:43468964..43468988 (25 bp)
TGGTTAGCCCTGCAAGCTCGTCCAG
LOC_Os01g74490
Os.28573.1.S1_at--1022--10451Chr01:43468967..43468991 (25 bp)
TTAGCCCTGCAAGCTCGTCCAGGTT
LOC_Os01g74490
Os.28573.1.S1_at--633--9011Chr01:43468974..43468998 (25 bp)
TGCAAGCTCGTCCAGGTTCCTTCTC
LOC_Os01g74490
Os.28573.1.S1_at--77--3011Chr01:43469083..43469107 (25 bp)
AATGAGATCGTAGCTGCTGCAGTGG
LOC_Os01g74490
Os.28573.1.S1_at--848--8891Chr01:43469085..43469109 (25 bp)
TGAGATCGTAGCTGCTGCAGTGGAA
LOC_Os01g74490
Os.28573.1.S1_at--849--932Chr03:20104754..20104845 (25 bp)
AGGAAAAGAGAGAGTCATCGTCGCA
NONE
Os.28573.1.S1_at--989--10471Chr01:43469418..43469442 (25 bp)
TTACTGCTTGCTTCACCCTTAATTT
LOC_Os01g74490
Os.28573.1.S1_at--791--9071Chr01:43469426..43469450 (25 bp)
TGCTTCACCCTTAATTTTAGATTAT
LOC_Os01g74490
Os.28573.1.S1_at--784--9171Chr01:43469469..43469493 (25 bp)
TAAGTACTACTGTATACGGAAATTT
NONE
Target Sequence 
AAGGCGAACAAGAGCAAGCAGCAGCTGGTTAGCCCTGCAAGCTCGTCCAGGTTCCTTCTCAACTCCTCCCGGATGCAACC
CAGCGCGGATGAGTTGCCGCCGCCCTTCGTCATCCCGGTTGCTGTCGCGGCTGCGGCGGAGGAGAATGAGATCGTAGCTG
CTGCAGTGGAAGGAGGAGGAGGAGAAGAGGAAAAGAGAGAGTCATCGTCGCAGGTGGAGGTGGTGGTCCTGCGGGTGTCC
CTGCACTGCAAGGGATGCGCGGGGAAGGTGAAGAAGCACATCTCCAAGATGGAGGGCGTCACCTCCTTGGACATCGACAT
CGCCACCAAGAAGGTCACCGTCGTCGGCCACGTCACGCCGCTGTCCGTGCTCACTGCCGTCTCCAAGATCAAGCCCGCAC
AGTTCTGGCCCATCTCCTCCTCCTCATCGCCCATGCCTCCACGCGCTTCCGCTTCCTTCTGATTTCTCATCCACCCTGCT
TACTGCTTGCTTCACCCTTAATTTTAGATTATTATGTGCACTAGTATCTGTAAGTACTACTGTATACGGAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis