Browse Element(s) Details


Os.53500.1.S1_at

Description gb:AK072971.1
DB_XREF= gi:32982994
TID=Os.53500.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148G18, full insert sequence.
FL= gb:AK072971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7452011/11Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein
LOC_Os01g74520Os.14216.3.S1_x_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74520Os.53500.1.S1_at11/111+43486359..43489697Ubiquinone biosynthesis methyltransferase coq5, putative, expressed
LOC_Os01g74530Os.14216.1.S1_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74530Os.14216.1.S1_a_at11/111+43490311..43493738protein phosphatase 2C, putative, expressed
LOC_Os01g74540Os.42941.1.S1_s_at11/111+43498943..43499888GATA zinc finger family protein, expressed
LOC_Os01g74550Os.42940.1.S1_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74550Os.42940.1.S1_x_at11/111+43502295..43505855transposon protein, putative, unclassified
LOC_Os01g74560OsAffx.9725.1.S1_at7/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74560OsAffx.27865.1.S1_x_at3/111+43508564..43509822transposon protein, putative, Pong sub-class
LOC_Os01g74570OsAffx.9724.1.S1_at11/111+43512468..43513164Tetraspanin family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53500.1.S1_at--997--6691Chr01:43487949..43487973 (25 bp)
GTTCCTATGCTTGGAATTGAGTCAT
LOC_Os01g74520
Os.53500.1.S1_at--283--3171Chr01:43487935..43487959 (25 bp)
AATTGAGTCATGTGGATGTTCCGCT
LOC_Os01g74520
Os.53500.1.S1_at--400--7491Chr01:43487924..43487948 (25 bp)
GTGGATGTTCCGCTTTTTAAAGAGA
LOC_Os01g74520
Os.53500.1.S1_at--681--5471Chr01:43486627..43486651 (25 bp)
GAACATTCTGGGTTTCAAGTTTGAT
LOC_Os01g74520
Os.53500.1.S1_at--1076--10331Chr01:43486596..43486620 (25 bp)
TTTACTGTTACTCCTACGGCAACGG
LOC_Os01g74520
Os.53500.1.S1_at--297--3211Chr01:43486571..43486595 (25 bp)
CAAGGTCTTGTGAAGCGGGCGTTAA
LOC_Os01g74520
Os.53500.1.S1_at--1020--4651Chr01:43486557..43486581 (25 bp)
GCGGGCGTTAAGAATCAGGACCTAA
LOC_Os01g74520
Os.53500.1.S1_at--1076--2531Chr01:43486526..43486550 (25 bp)
AACTAACTCAATCTTGTACCAGTAG
LOC_Os01g74520
Os.53500.1.S1_at--670--8751Chr01:43486512..43486536 (25 bp)
TGTACCAGTAGTTAGCATTGCAATA
LOC_Os01g74520
Os.53500.1.S1_at--153--5031Chr01:43486480..43486504 (25 bp)
GCAGTGTTTCTGTACATGTTTCTTG
LOC_Os01g74520
Os.53500.1.S1_at--991--5571Chr01:43486437..43486461 (25 bp)
GAAAGGCTTTTGACAGCCCAGCTTT
LOC_Os01g74520
Target Sequence 
GTTCCTATGCTTGGAATTGAGTCATGTGGATGTTCCGCTTTTTAAAGAGATTTATGATGTTTATTCATTTTCTGTGATTC
CGGCTGTGGGAGAACTAGTGGCCGGTGATCGCCAGTCATACCAATACTTGGTTGAGAGTATCCGCCGGTTTCCAAATCAG
GAAAAGTTTGCTCAGATGATCCAAGAAGCCGGNTTNGAGAGGGTAGAATACGAAAATCTGGTGGGTGGTGTGGTTGCCAT
TCACTCTGGACTGAAACTGTAGAACATTCTGGGTTTCAAGTTTGATGGATACTTTACTGTTACTCCTACGGCAACGGCAA
GGTCTTGTGAAGCGGGCGTTAAGAATCAGGACCTAACGAACAAACTAACTCAATCTTGTACCAGTAGTTAGCATTGCAAT
AAATACATGCAGTGTTTCTGTACATGTTTCTTGTATTTATTTTTTTTAGATGAAAGGCTTTTGACAGCCCAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis