Browse Element(s) Details


Os.25416.1.A1_at

Description gb:CF329325
DB_XREF= gi:33806887
DB_XREF=NACL--04-J20.g1
CLONE=NACL--04-J20
TID=Os.25416.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative P-glycoprotein (P0459B04.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7447011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein
LOC_Os01g74510Os.33444.1.A1_at11/111+43479351..43484933expressed protein
LOC_Os01g74510Os.33444.2.S1_at1/111+43479351..43484933expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005739cellular_componentmitochondrion
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25416.1.A1_at--806--211Chr01:43453416..43453440 (25 bp)
ATTTGTGTTGCGATCTGACAGGATA
LOC_Os01g74470
Os.25416.1.A1_at--373--931Chr01:43453392..43453416 (25 bp)
AGGCATAGGCATTGGCACAGGCTCT
LOC_Os01g74470
Os.25416.1.A1_at--48--31Chr01:43453382..43453406 (25 bp)
ATTGGCACAGGCTCTGGAGTCTGGA
LOC_Os01g74470
Os.25416.1.A1_at--854--8031Chr01:43453367..43453391 (25 bp)
GGAGTCTGGACACATGATATTTTAA
LOC_Os01g74470
Os.25416.1.A1_at--692--5351Chr01:43453313..43453337 (25 bp)
GAAGAGTCCGGAATAGCATATAGCA
LOC_Os01g74470
Os.25416.1.A1_at--79--3611Chr01:43453251..43453275 (25 bp)
CATTGAATCCACTCCAACATTGACT
LOC_Os01g74470
Os.25416.1.A1_at--463--8871Chr01:43453215..43453239 (25 bp)
TGAGTCCGGAATAGCATATAGCACA
LOC_Os01g74470
Os.25416.1.A1_at--628--31Chr01:43453186..43453210 (25 bp)
ATTGGTCAACATTCCATGTGCTGCG
LOC_Os01g74470
Os.25416.1.A1_at--1037--9151Chr01:43453165..43453189 (25 bp)
TGCGCTGCCTGCCTATTCATTCATT
LOC_Os01g74470
Os.25416.1.A1_at--625--10771Chr01:43452903..43452927 (25 bp)
TTGATCATGTTTAAGCAGGCGCACT
LOC_Os01g74470
Os.25416.1.A1_at--198--5011Chr01:43452889..43452913 (25 bp)
GCAGGCGCACTGGTAATTAATTTGT
LOC_Os01g74470
Target Sequence 
ATTTGTGTTGCGATCTGACAGGATAGGCATAGGCATTGGCACAGGCTCTGGAGTCTGGACACATGATATTTTAATTTGCT
TTGCTGTAATAAAGCTTTGAGATGAAGAGTCCGGAATAGCATATAGCATNGCGGCATAAAGGAGGTGAAGCTGAGATGCG
CTGTCNCATTGAATCCACTCCAACATTGACTTGAGAGTTTGATGAGTCCGGAATAGCATATAGCACATGGAATTGGTCAA
CATTCCATGTGCTGCGCTGCCTGCCTATTCATTCATTTTTGTAACTGATCGTTATTAGATCGGATTTGNTCATTGTGATA
GTGTGATGTAGTTTTGGCATTTTATTTTTGACACTTAAATGGAATTCTTGGNGGGGGGGGGGGTGTGTTGTGTAGTTTGG
TACTGCATTGAAGTGTAATTAGGGAAGGGATATTATATTTGTTATGGTGGAAGTAGTAGAAGTAATTTTGGGCATAGGTG
TGCTGGAAGTGGGAGTGGGTAGGTATTCTTGTTTGATCATGTTTAAGCAGGCGCACTGGTAATTAATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25416.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis