Browse Element(s) Details


OsAffx.21919.1.S1_at

Description gb:NM_189498.1
DB_XREF= gi:34906079
GEN=P0459B04.18
TID=OsAffx.21919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0459B04.18 (P0459B04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g744602/11SAND family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74480Os.18214.1.S1_at11/111+43463088..43464565legumin, putative, expressed
LOC_Os01g74490Os.48758.1.A1_s_at11/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74490Os.28573.1.S1_at10/111+43468689..43469490heavy metal-associated domain containing protein, expressed
LOC_Os01g74500NANA1+43470565..43473637hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21919.1.S1_at--136--4371Chr01:43447579..43447603 (25 bp)
CCACTGGCTGACAAGGTTTGTACCT
LOC_Os01g74460
OsAffx.21919.1.S1_at--959--7851Chr01:43447565..43447589 (25 bp)
GGTTTGTACCTGTCACAATCAGTTT
LOC_Os01g74460
OsAffx.21919.1.S1_at--165--812Chr09:10948040..10948062 (23 bp)
ATGGTTACTGCGCAGTAACCGTGCT
NONE
OsAffx.21919.1.S1_at--1098--4551Chr01:43446670..43446694 (25 bp)
GCGCCCGGCGGTAACCTGGCCTTTG
NONE
OsAffx.21919.1.S1_at--234--8451Chr01:43446654..43446678 (25 bp)
TGGCCTTTGGGAAACCTGTGCGTCA
NONE
OsAffx.21919.1.S1_at--251--10831Chr01:43446648..43446672 (25 bp)
TTGGGAAACCTGTGCGTCAACCACT
NONE
OsAffx.21919.1.S1_at--311--7291Chr01:43446637..43446661 (25 bp)
GTGCGTCAACCACTTTTTCGAAGTT
NONE
OsAffx.21919.1.S1_at--417--3671Chr01:43446625..43446649 (25 bp)
CTTTTTCGAAGTTTATGCCATGTTT
NONE
OsAffx.21919.1.S1_at--918--10131Chr01:43446612..43446636 (25 bp)
TATGCCATGTTTTAAACGCTGAGAA
NONE
OsAffx.21919.1.S1_at--293--3031Chr01:43445444..43445468 (25 bp)
AATGCGTGACTTCATTCTTCCATAC
NONE
OsAffx.21919.1.S1_at--408--5699Chr01:12124715..12124763 (25 bp)
GACTTCATTCTTCCATACAAGATTG
NONE
Target Sequence 
CCACTGGCTGACAAGGTTTGTACCTGTCACAATCAGTTTATAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGG
ATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATATTGTCTTTTTTTTATGGTT
ACTGCGCAGTAACCGTGCTTACCGCCGGGGCGCCCGGCGGTAACCTGGCCTTTGGGAAACCTGTGCGTCAACCACTTTTT
CGAAGTTTATGCCATGTTTTAAACGCTGAGAATGTGCGAGAGAGAGACGGGCATATTTTAATCCAACAATTTATCATCTT
AATTACTTTCTCGGATTTAATGCGTGACTTCATTCTTCCATACAAGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis