Browse Element(s) Details


OsAffx.29216.1.S1_at

Description tigr:9636.m01548
TID=OsAffx.29216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1544011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15390NANA8+9362974..9363768hypothetical protein
LOC_Os08g15400Os.25754.2.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400Os.53479.1.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400OsAffx.16205.1.S1_at1/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15410OsAffx.17008.1.S1_at11/118+9368901..9370655hypothetical protein
LOC_Os08g15410Os.15740.1.A1_at1/118+9368901..9370655hypothetical protein
LOC_Os08g15420Os.55417.1.S1_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15420OsAffx.17009.1.S1_x_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15430OsAffx.5825.1.S1_at11/118+9382909..9383398hypothetical protein
LOC_Os08g15440OsAffx.29216.1.S1_at11/118+9385596..9387721hypothetical protein
LOC_Os08g15450OsAffx.29217.1.S1_at11/118+9393206..9395890Nodulin-like family protein
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15480OsAffx.29218.1.S1_s_at8/118+9412386..9413252hypothetical protein
LOC_Os08g15480OsAffx.29576.2.S1_x_at1/118+9412386..9413252hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29216.1.S1_at--945--1691Chr08:9387379..9387403 (25 bp)
AGCCACGACCGCTCAGGAAGAGGTG
LOC_Os08g15440
OsAffx.29216.1.S1_at--902--5831Chr08:9387457..9387481 (25 bp)
GACCTCGCAAGATCCACTAGTGCAT
LOC_Os08g15440
OsAffx.29216.1.S1_at--310--10071Chr08:9387474..9387498 (25 bp)
TAGTGCATAAGGCATCGTCTACTCC
LOC_Os08g15440
OsAffx.29216.1.S1_at--103--3811Chr08:9387514..9387538 (25 bp)
CTCCCATGGTGAGCCGGCATGGAGA
LOC_Os08g15440
OsAffx.29216.1.S1_at--718--6171Chr08:9387564..9387588 (25 bp)
GAGGATGGGTCCTTTCGACAACGAC
LOC_Os08g15440
OsAffx.29216.1.S1_at--301--4111Chr08:9387579..9387603 (25 bp)
CGACAACGACGCAAGGAGAACCAAT
LOC_Os08g15440
OsAffx.29216.1.S1_at--396--3171Chr08:9387601..9387625 (25 bp)
AATTGGTGCTAAGCTCGACCCCAAG
LOC_Os08g15440
OsAffx.29216.1.S1_at--134--4391Chr08:9387621..9387645 (25 bp)
CCAAGCAGCCACAGCGTGGAAGCAG
LOC_Os08g15440
OsAffx.29216.1.S1_at--95--3991Chr08:9387635..9387659 (25 bp)
CGTGGAAGCAGGACGCAACTGTCTA
LOC_Os08g15440
OsAffx.29216.1.S1_at--1023--5771Chr08:9387646..9387670 (25 bp)
GACGCAACTGTCTAGATGGCAAGTG
LOC_Os08g15440
OsAffx.29216.1.S1_at--690--2871Chr08:9387666..9387690 (25 bp)
AAGTGGAGGCGAGCCTCTATGCCAG
LOC_Os08g15440
Target Sequence 
AGCCACGACCGCTCAGGAAGAGGTGGAGTGGAGCTTGATAGGGGAAGGGGGTGTGGAAGAAAACACCGAGAGGGTGGTGA
CCTCGCAAGATCCACTAGTGCATAAGGCATCGTCTACTCCGCCCCGTCGATCTTCCTCCCATGGTGAGCCGGCATGGAGA
GTTGGAGGTCGAGGTTTGTCAAGGCGAGGATGGGTCCTTTCGACAACGACGCAAGGAGAACCAATTGGTGCTAAGCTCGA
CCCCAAGCAGCCACAGCGTGGAAGCAGGACGCAACTGTCTAGATGGCAAGTGGAGGCGAGCCTCTATGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis