Browse Element(s) Details


Os.55417.1.S1_at

Description gb:AK108045.1
DB_XREF= gi:32993254
TID=Os.55417.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E05, full insert sequence.
FL= gb:AK108045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1542011/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15360NANA8+9351878..9353515retrotransposon protein, putative, unclassified
LOC_Os08g15370OsAffx.20387.1.S1_x_at1/118+9356243..9358702retrotransposon protein, putative, unclassified
LOC_Os08g15380NANA8+9359867..9360426retrotransposon protein, putative, unclassified
LOC_Os08g15390NANA8+9362974..9363768hypothetical protein
LOC_Os08g15400Os.25754.2.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400Os.53479.1.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400OsAffx.16205.1.S1_at1/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15410OsAffx.17008.1.S1_at11/118+9368901..9370655hypothetical protein
LOC_Os08g15410Os.15740.1.A1_at1/118+9368901..9370655hypothetical protein
LOC_Os08g15420Os.55417.1.S1_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15420OsAffx.17009.1.S1_x_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15430OsAffx.5825.1.S1_at11/118+9382909..9383398hypothetical protein
LOC_Os08g15440OsAffx.29216.1.S1_at11/118+9385596..9387721hypothetical protein
LOC_Os08g15450OsAffx.29217.1.S1_at11/118+9393206..9395890Nodulin-like family protein
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55417.1.S1_at--710--5931Chr08:9380967..9380991 (25 bp)
GAGCAGGTCAGCTAGCGACCACCAC
LOC_Os08g15420
Os.55417.1.S1_at--125--8451Chr08:9381085..9381109 (25 bp)
GGCCAGCCAAGACACTTCCATGGAT
LOC_Os08g15420
Os.55417.1.S1_at--914--5611Chr08:9381095..9381119 (25 bp)
GACACTTCCATGGATCGACAGAGGA
LOC_Os08g15420
Os.55417.1.S1_at--1052--6551Chr08:9381118..9381142 (25 bp)
GATTACATTTTTAGCCTTCTTCTCC
LOC_Os08g15420
Os.55417.1.S1_at--435--9571Chr08:9381135..9381159 (25 bp)
TCTTCTCCTTATTTTTATCCCTTTG
LOC_Os08g15420
Os.55417.1.S1_at--486--2491Chr08:9381187..9381211 (25 bp)
AACAGAGTGCGTCTCCATGTTACAA
LOC_Os08g15420
Os.55417.1.S1_at--91--3771Chr08:9381216..9381240 (25 bp)
CTCTTCTTTTCTTTGTGCTTTAATT
LOC_Os08g15420
Os.55417.1.S1_at--543--10011Chr08:9381240..9381264 (25 bp)
TAGCTAGTGCTTTGTTGCTAGGAGA
LOC_Os08g15420
Os.55417.1.S1_at--723--10091Chr08:9381258..9381282 (25 bp)
TAGGAGAGGCAAGCAGGCCGCATCA
LOC_Os08g15420
Os.55417.1.S1_at--348--8411Chr08:9381273..9381297 (25 bp)
GGCCGCATCAGGTTGTTAATTACAT
LOC_Os08g15420
Os.55417.1.S1_at--193--131Chr08:9381302..9381326 (25 bp)
ATTAAGTTGTGTCAATTCAGTAGCC
LOC_Os08g15420
Target Sequence 
GAGCAGGTCAGCTAGCGACCACCACCACAATAAAGAAAAAAAAGCCACCGCCGCCGCCGCTGTCGCCGCCATGCGTGCAC
AGCGCGCCGGCTGGCTGGCCGGAGGCGAAGACGACGACGGCCAGCCAAGACACTTCCATGGATCGACAGAGGATTACATT
TTTAGCCTTCTTCTCCTTATTTTTATCCCTTTGATATATTTTTTGTTCAGAGATAAAAAAAACAGAGTGCGTCTCCATGT
TACAAAGAACTCTTCTTTTCTTTGTGCTTTAATTAGCTAGTGCTTTGTTGCTAGGAGAGGCAAGCAGGCCGCATCAGGTT
GTTAATTACATTCAGATTAAGTTGTGTCAATTCAGTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis