Browse Element(s) Details


OsAffx.16205.1.S1_at

Description tigr:9635.m01071
TID=OsAffx.16205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1099011/11hypothetical protein
LOC_Os10g023142/11hypothetical protein
LOC_Os04g540502/11hypothetical protein
LOC_Os11g122402/11NB-ARC domain containing protein, expressed
LOC_Os04g213302/11hypothetical protein
LOC_Os08g222702/11retrotransposon protein, putative, unclassified
LOC_Os07g052302/11hypothetical protein
LOC_Os05g267102/11hypothetical protein
LOC_Os04g109242/11hypothetical protein
LOC_Os01g713902/11hypothetical protein
LOC_Os12g120802/11expressed protein
LOC_Os12g091642/11hypothetical protein
LOC_Os09g222402/11hypothetical protein
LOC_Os04g268102/11hypothetical protein
LOC_Os03g297102/11hypothetical protein
LOC_Os03g162502/11transposon protein, putative, unclassified
LOC_Os06g445302/11hypothetical protein
LOC_Os01g411002/11hypothetical protein
LOC_Os03g076302/11hypothetical protein
LOC_Os12g050102/11hypothetical protein
LOC_Os09g042702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g134302/11hypothetical protein
LOC_Os06g023042/11retrotransposon protein, putative, unclassified
LOC_Os08g154001/11retrotransposon protein, putative, unclassified
LOC_Os03g461341/11hypothetical protein
LOC_Os04g393101/11hypothetical protein
LOC_Os02g105701/11hypothetical protein
LOC_Os08g339801/11hypothetical protein
LOC_Os11g363201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10960OsAffx.5289.1.S1_at11/117+6013523..6015699expressed protein
LOC_Os07g10970OsAffx.5290.1.S1_at11/117+6017150..6019452expressed protein
LOC_Os07g10979NANA7+6026296..6026941NA
LOC_Os07g10990OsAffx.16205.1.S1_at11/117+6031397..6032250hypothetical protein
LOC_Os07g11000Os.50928.1.S1_at11/117+6034377..6042702expressed protein
LOC_Os07g11010Os.2220.1.S1_at11/117+6049606..6058815Kinase associated protein phosphatase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009933biological_processmeristem organization
GO:0000151cellular_componentubiquitin ligase complex
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16205.1.S1_at--407--8771Chr07:6031532..6031556 (25 bp)
TGTTCGGCCTCCCTTATCCCAAGAA
LOC_Os07g10990
OsAffx.16205.1.S1_at--624--9291Chr07:6031541..6031565 (25 bp)
TCCCTTATCCCAAGAACTCTAGAAC
LOC_Os07g10990
OsAffx.16205.1.S1_at--1149--9511Chr07:6031558..6031582 (25 bp)
TCTAGAACTTGTTGGGCTCCTCTCA
LOC_Os07g10990
OsAffx.16205.1.S1_at--856--2491Chr07:6031563..6031587 (25 bp)
AACTTGTTGGGCTCCTCTCAAACAA
LOC_Os07g10990
OsAffx.16205.1.S1_at--102--3291Chr07:6031581..6031911 (25 bp)
CAAACAAGTCTTTGCCGTCATCGAT
LOC_Os07g10990
OsAffx.16205.1.S1_at--128--2851Chr07:6031893..6031916 (24 bp)
AAGTCTTTGCCGTCATCGATCAAGG
LOC_Os07g10990
OsAffx.16205.1.S1_at--967--9171Chr07:6031899..6031923 (25 bp)
TGCCGTCATCGATCAAGGTACAGAT
LOC_Os07g10990
OsAffx.16205.1.S1_at--896--5171Chr07:6031936..6031960 (25 bp)
GCAAGATTATGGATGTCATGGTTAT
LOC_Os07g10990
OsAffx.16205.1.S1_at--851--787342Chr12:2177393..2177583 (25 bp)
GGTTATGGATACCACTTCTACTTGG
LOC_Os12g05010
OsAffx.16205.1.S1_at--14--851334Chr12:2177398..2177588 (25 bp)
TGGATACCACTTCTACTTGGACAAG
LOC_Os12g05010
OsAffx.16205.1.S1_at--293--3691Chr07:6032157..6032181 (25 bp)
CTATGGGTATAAGTGCGGATTCGAT
LOC_Os07g10990
Target Sequence 
TGTTCGGCCTCCCTTATCCCAAGAACTCTAGAACTTGTTGGGCTCCTCTCAAACAAGTCTTTGCCGTCATCGATCAAGGT
ACAGATGCAGAGGAAGAAGCAAGATTATGGATGTCATGGTTATGGATACCACTTCTACTTGGACAAGGGGACATCTATGG
GTATAAGTGCGGATTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis