Browse Element(s) Details


Os.2220.1.S1_at

Description gb:AF075603.1
DB_XREF= gi:3328363
GEN=kapp
TID=Os.2220.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2220 (NCBI UniGene Cluster)
DEF=Oryza sativa kinase associated protein phosphatase (kapp) mRNA, complete cds.
PROD=kinase associated protein phosphatase
FL= gb:AF075603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1101011/11Kinase associated protein phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10979NANA7+6026296..6026941NA
LOC_Os07g10990OsAffx.16205.1.S1_at11/117+6031397..6032250hypothetical protein
LOC_Os07g11000Os.50928.1.S1_at11/117+6034377..6042702expressed protein
LOC_Os07g11010Os.2220.1.S1_at11/117+6049606..6058815Kinase associated protein phosphatase, putative, expressed
LOC_Os07g11020OsAffx.16206.1.S1_at11/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11020Os.52782.1.S1_at1/117+6061189..6067617Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g11030Os.47463.1.S1_x_at6/117+6070566..6075530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11030Os.14491.2.S1_x_at5/117+6070566..6075530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11040NANA7+6077124..6080429transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009934biological_processregulation of meristem organization
GO:0005886cellular_componentplasma membrane
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0019901molecular_functionprotein kinase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2220.1.S1_at--41--3071Chr07:6057356..6057380 (25 bp)
AATCTAGGTGATTCAGCTTGTGTTA
LOC_Os07g11010
Os.2220.1.S1_at--498--2811Chr07:6057510..6057534 (25 bp)
AAGATCATCGAGTAGCTAGTGTAAC
LOC_Os07g11010
Os.2220.1.S1_at--792--10011Chr07:6057549..6057573 (25 bp)
TAGCAAGAGCTGGACAGGCCCTGAA
LOC_Os07g11010
Os.2220.1.S1_at--581--5651Chr07:6057561..6057585 (25 bp)
GACAGGCCCTGAAAGCTGGCGAAGT
LOC_Os07g11010
Os.2220.1.S1_at--86--2971Chr07:6057685..6057706 (22 bp)
AATGGACTTAATCTCGCCAGGATGT
LOC_Os07g11010
Os.2220.1.S1_at--582--5171Chr07:6057729..6057753 (25 bp)
GCAAGATTCACGCTTCAGCTCAGAA
LOC_Os07g11010
Os.2220.1.S1_at--405--8911Chr07:6057761..6057785 (25 bp)
TGAGCCAAGCTGTTCACATTACAAA
LOC_Os07g11010
Os.2220.1.S1_at--511--5091Chr07:6057791..6057815 (25 bp)
GCACAGCTTTTGCAGTTATTGCTAG
LOC_Os07g11010
Os.2220.1.S1_at--789--2311Chr07:6057934..6057958 (25 bp)
AAAGGGCAGTTCAGCTTGTTGTTGA
LOC_Os07g11010
Os.2220.1.S1_at--357--5971Chr07:6058162..6058186 (25 bp)
GAGAACAGACCATTGTATTGCCAAA
LOC_Os07g11010
Os.2220.1.S1_at--372--4811Chr07:6058242..6058266 (25 bp)
GCTCGTCGCTTCCATAATTTTGCTT
LOC_Os07g11010
Target Sequence 
AATCTAGGTGATTCAGCTTGTGTTATGAGTGTCAATGGAAAGATGATTGAAATGACTGAAGATCATCGAGTAGCTAGTGT
AACTGAACGAGCTAGGATAGCAAGAGCTGGACAGGCCCTGAAAGCTGGCGAAGTCCGGATTAATGGACTTAATCTCGCCA
GGATGTTNGGAGATAAGTTTCTAAAAGAGCAAGATTCACGCTTCAGCTCAGAACCATATGTGAGCCAAGCTGTTCACATT
ACAAAAGCATGCACAGCTTTTGCAGTTATTGCTAGCGATGGGCTNTGGGATGTTATTAGTACTAAAAGGGCAGTTCAGCT
TGTTGTTGAGGGTAGGGAGAGAAACAGTGGTGATAGTGCNTCGGCGGACAAAGTAGCCAATCGTATACTAAGTGAAGCTA
GGAATTTGCGAACCAAGGACAATACATCCGTAATATTTGTAGATTTTGACATCTTGAGAACAGACCATTGTATTGCCAAA
TGATTTTGACTATTTTTGGGACACCATATTCCAAGAAATCATTTGCCTGGCTGTTGCTCGTCGCTTCCATAATTTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis