Browse Element(s) Details


OsAffx.5825.1.S1_at

Description tigr:9636.m01547
TID=OsAffx.5825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to globulin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1543011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15370OsAffx.20387.1.S1_x_at1/118+9356243..9358702retrotransposon protein, putative, unclassified
LOC_Os08g15380NANA8+9359867..9360426retrotransposon protein, putative, unclassified
LOC_Os08g15390NANA8+9362974..9363768hypothetical protein
LOC_Os08g15400Os.25754.2.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400Os.53479.1.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400OsAffx.16205.1.S1_at1/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15410OsAffx.17008.1.S1_at11/118+9368901..9370655hypothetical protein
LOC_Os08g15410Os.15740.1.A1_at1/118+9368901..9370655hypothetical protein
LOC_Os08g15420Os.55417.1.S1_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15420OsAffx.17009.1.S1_x_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15430OsAffx.5825.1.S1_at11/118+9382909..9383398hypothetical protein
LOC_Os08g15440OsAffx.29216.1.S1_at11/118+9385596..9387721hypothetical protein
LOC_Os08g15450OsAffx.29217.1.S1_at11/118+9393206..9395890Nodulin-like family protein
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5825.1.S1_at--762--9411Chr08:9383313..9383360 (25 bp)
TCGTGCGAGGCCTAGGTTCGCCAAC
LOC_Os08g15430
OsAffx.5825.1.S1_at--810--7191Chr08:9383311..9383331 (21 bp)
GTGCGAGGCCTAGGTTCGCCAACCG
LOC_Os08g15430
OsAffx.5825.1.S1_at--218--9551Chr08:9383275..9383299 (25 bp)
TCTATGAGGCCAACACCCGCAGCTT
LOC_Os08g15430
OsAffx.5825.1.S1_at--1156--671Chr08:9383233..9383257 (25 bp)
ATGACATTCGCGTCGCCGTTGTCAA
LOC_Os08g15430
OsAffx.5825.1.S1_at--1040--7171Chr08:9383062..9383086 (25 bp)
GTCGGTCAAGGTCGCGTATGTCCTA
LOC_Os08g15430
OsAffx.5825.1.S1_at--873--7811Chr08:9383059..9383083 (25 bp)
GGTCAAGGTCGCGTATGTCCTAGAT
LOC_Os08g15430
OsAffx.5825.1.S1_at--769--3211Chr08:9383056..9383080 (25 bp)
CAAGGTCGCGTATGTCCTAGATGGC
LOC_Os08g15430
OsAffx.5825.1.S1_at--862--1031Chr08:9383054..9383078 (25 bp)
AGGTCGCGTATGTCCTAGATGGCGA
LOC_Os08g15430
OsAffx.5825.1.S1_at--186--1671Chr08:9383024..9383048 (25 bp)
AGCCCGAGATCGTGTACCCGCACAT
LOC_Os08g15430
OsAffx.5825.1.S1_at--380--4071Chr08:9383020..9383044 (25 bp)
CGAGATCGTGTACCCGCACATGTTC
LOC_Os08g15430
OsAffx.5825.1.S1_at--447--731Chr08:9383001..9383025 (25 bp)
ATGTTCCCGCACATGTCGCCCGGTG
LOC_Os08g15430
Target Sequence 
TCGTGCGAGGCCTAGGTTCGCCAACCGCCACGGCCGCCTCTATGAGGCCAACACCCGCAGCTTCCTCGACCTCGCCGAGC
ATGACATTCGCGTCGCCGTTGTCAACATCACCGCGGGATCCATGAACGCGCCATTCTACAACACCCGGTCGGTCAAGGTC
GCGTATGTCCTAGATGGCGAGGGGGAGCCCGAGATCGTGTACCCGCACATGTTCCCGCACATGTCGCCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis