Browse Element(s) Details


OsAffx.17008.1.S1_at

Description tigr:9636.m01545
TID=OsAffx.17008.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15350NANA8+9348223..9350257retrotransposon protein, putative, unclassified
LOC_Os08g15360NANA8+9351878..9353515retrotransposon protein, putative, unclassified
LOC_Os08g15370OsAffx.20387.1.S1_x_at1/118+9356243..9358702retrotransposon protein, putative, unclassified
LOC_Os08g15380NANA8+9359867..9360426retrotransposon protein, putative, unclassified
LOC_Os08g15390NANA8+9362974..9363768hypothetical protein
LOC_Os08g15400Os.25754.2.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400Os.53479.1.S1_x_at2/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15400OsAffx.16205.1.S1_at1/118+9364114..9367714retrotransposon protein, putative, unclassified
LOC_Os08g15410OsAffx.17008.1.S1_at11/118+9368901..9370655hypothetical protein
LOC_Os08g15410Os.15740.1.A1_at1/118+9368901..9370655hypothetical protein
LOC_Os08g15420Os.55417.1.S1_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15420OsAffx.17009.1.S1_x_at11/118+9376997..9381326glycosyl transferase family 2 protein, putative, expressed
LOC_Os08g15430OsAffx.5825.1.S1_at11/118+9382909..9383398hypothetical protein
LOC_Os08g15440OsAffx.29216.1.S1_at11/118+9385596..9387721hypothetical protein
LOC_Os08g15450OsAffx.29217.1.S1_at11/118+9393206..9395890Nodulin-like family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17008.1.S1_at--637--9751Chr08:9369763..9369787 (25 bp)
TAATAATGTCTCTCAATCTCGGAAT
LOC_Os08g15410
OsAffx.17008.1.S1_at--8--1231Chr08:9369708..9369732 (25 bp)
AGTTCTTCTTCTCCGAAGCAGGACG
LOC_Os08g15410
OsAffx.17008.1.S1_at--220--6731Chr08:9369666..9369690 (25 bp)
GTTCTTCCGCAACCGAATCTGATTA
LOC_Os08g15410
OsAffx.17008.1.S1_at--357--191Chr08:9369642..9369666 (25 bp)
ATTTCTCCCGAGATTGTGCCTATGG
LOC_Os08g15410
OsAffx.17008.1.S1_at--593--9411Chr08:9369586..9369610 (25 bp)
TCGTGCGGGCCAAGTGGTGCATCAA
LOC_Os08g15410
OsAffx.17008.1.S1_at--206--1351Chr08:9369540..9369564 (25 bp)
AGAGTTGATCTCACTACTGCTACGA
LOC_Os08g15410
OsAffx.17008.1.S1_at--241--7911Chr08:9369478..9369502 (25 bp)
GGTTGAGCCTATTCTTCCGGAAGAG
LOC_Os08g15410
OsAffx.17008.1.S1_at--1091--411Chr08:9369142..9369162 (21 bp)
ATCATCAGCTTGACGTTTGGTGGGA
LOC_Os08g15410
OsAffx.17008.1.S1_at--474--1291Chr08:9369114..9369138 (25 bp)
AGATCCTATTCAGGGACGTGTCTTT
LOC_Os08g15410
OsAffx.17008.1.S1_at--392--6431Chr08:9369071..9369095 (25 bp)
GATCTTGATTCGGTTCCTAGCAAAA
LOC_Os08g15410
OsAffx.17008.1.S1_at--318--3911Chr08:9368943..9368967 (25 bp)
CTGGTTGGTCTTTTGCTGTTGTAGA
LOC_Os08g15410
Target Sequence 
TAATAATGTCTCTCAATCTCGGAATAAATTTGTTTGGGTTAAAAAGAAAAAGAGGAGTTCTTCTTCTCCGAAGCAGGACG
TCCCTTCCTCTTCCGCTGTTCTTCCGCAACCGAATCTGATTATTTCTCCCGAGATTGTGCCTATGGCGAACACAAATCCG
AATCCCCTTCGTTTTCTTCGTGCGGGCCAAGTGGTGCATCAAGGAAGTGATTTGCGCATTTCGAGAGTTGATCTCACTAC
TGCTACGAGCCCCCCCCGATATCATGAGGAGTTTGCTTTGGCTTTGGTTGAGCCTATTCTTCCGGAAGAGCTCTGGGATG
ATCATCAGCTTGACGTTTGGTGGGAGCAAGATCCTATTCAGGGACGTGTCTTTGTTAGATTTATGTACAGGGATCTTGAT
TCGGTTCCTAGCAAAATAGTTCTTCAAGATCCAACAGCTGGTGTTGGAGAGTCTTGGACAATTTCTGTCTTTATCTTAGA
TGGTGAGTTTGCAGATATGTTCCCCCTGAAGGGGTGCTTCTGGTTGGTCTTTTGCTGTTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis