Browse Element(s) Details


OsAffx.29842.2.S1_at

Description tigr:9636.m01555
TID=OsAffx.29842.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g155109/11transposon protein, putative, unclassified
LOC_Os05g397903/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15460Os.15436.1.S1_at11/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.15436.1.S2_at10/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460OsAffx.10482.1.S1_x_at2/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15460Os.49078.2.S1_x_at1/118+9399345..9408477Preprotein translocase secY subunit, chloroplast precursor, putative, expressed
LOC_Os08g15480OsAffx.29218.1.S1_s_at8/118+9412386..9413252hypothetical protein
LOC_Os08g15480OsAffx.29576.2.S1_x_at1/118+9412386..9413252hypothetical protein
LOC_Os08g15490NANA8+9413986..9415007hypothetical protein
LOC_Os08g15500Os.14157.1.S1_at11/118+9418417..9422130expressed protein
LOC_Os08g15510OsAffx.29842.2.S1_x_at10/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.2.S1_at9/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_x_at5/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_at4/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.16831.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15520OsAffx.27865.1.S1_x_at1/118+9435832..9438044transposon protein, putative, Pong sub-class
LOC_Os08g15530NANA8+9438757..9440173hypothetical protein
LOC_Os08g15540OsAffx.17011.1.S1_at11/118+9442287..9442769hypothetical protein
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29842.2.S1_at--606--4511Chr08:9429871..9430072 (25 bp)
GCCGACTATGAAAATTCTGGAAAGA
LOC_Os08g15510
OsAffx.29842.2.S1_at--1022--2712Chr08:9429436..9429757 (25 bp)
AAGCACCTTGCTGGATTGGTGGGAG
LOC_Os08g15510
OsAffx.29842.2.S1_at--270--3091Chr05:23292148..23292448 (25 bp)
AATAAAGGCCAACGCTTCTACAGCT
LOC_Os05g39790
OsAffx.29842.2.S1_at--100--2311Chr05:23292145..23292445 (25 bp)
AAAGGCCAACGCTTCTACAGCTGCA
LOC_Os05g39790
OsAffx.29842.2.S1_at--898--3411Chr08:9428578..9428602 (25 bp)
CAGAAGTGATCTAGATTTGGACGAT
LOC_Os08g15510
OsAffx.29842.2.S1_at--890--9531Chr08:9428569..9428593 (25 bp)
TCTAGATTTGGACGATGTTAGCATC
LOC_Os08g15510
OsAffx.29842.2.S1_at--816--10233Chr09:8300543..8300563 (21 bp)
TTTGGACGATGTTAGCATCGATCAC
NONE
OsAffx.29842.2.S1_at--946--10452Chr08:9428552..9428576 (25 bp)
TTAGCATCGATCACATCATGGACCT
LOC_Os08g15510
OsAffx.29842.2.S1_at--526--1533Chr09:8300224..8300554 (25 bp)
AGCATCGATCACATCATGGACCTTC
NONE
OsAffx.29842.2.S1_at--368--4973Chr09:8300223..8300553 (25 bp)
GCATCGATCACATCATGGACCTTCT
NONE
OsAffx.29842.2.S1_at--869--3492Chr09:8300210..8300234 (25 bp)
CATGGACCTTCTAGATCCAAGCTCA
NONE
Target Sequence 
GCCGACTATGAAAATTCTGGAAAGAAGCCAAAAACAATTTTGACAGATGAAGATGGAGCTATGGCTAAAGCAATTAAAAT
AGTTCTTCCAGAAACTCATCATCGGATATGTGTATGGCACATGAATCAGAATGCCTGCAAGCACCTTGCTGGATTGGTGG
GAGATAAAAGATATGAAGAGGTAAAGTGTGACTTTAGAGCAACACAAAGTACACCGAAGCTAAAGGCAGAGTTGAGAATT
TTGAGAGATGTAGCAGAAGTTTATACTCCAGCAGTTTATAAGATATTTGAGGAAGAGGTAATGCAGACTTTGAATTGTGA
CATATTCTACTGTGGTGAGGTTGATGCAGAAAAGGTGTACAAAATAAAGGCCAACGCTTCTACAGCTGCAAAATCTGAAG
AAACATACTCCATGTCTACTAATTGTGTTGAAAAATTGGCAGAAGATATAGAGAAGTTCTTGAGAATCAGAAGTGATCTA
GATTTGGACGATGTTAGCATCGATCACATCATGGACCTTCTAGATCCAAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29842.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis