Browse Element(s) Details


OsAffx.17011.1.S1_at

Description tigr:9636.m01558
TID=OsAffx.17011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1554011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15500Os.14157.1.S1_at11/118+9418417..9422130expressed protein
LOC_Os08g15510OsAffx.29842.2.S1_x_at10/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.2.S1_at9/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_x_at5/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_at4/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.16831.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15520OsAffx.27865.1.S1_x_at1/118+9435832..9438044transposon protein, putative, Pong sub-class
LOC_Os08g15530NANA8+9438757..9440173hypothetical protein
LOC_Os08g15540OsAffx.17011.1.S1_at11/118+9442287..9442769hypothetical protein
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein
LOC_Os08g15570NANA8+9457660..9463755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15580OsAffx.21897.5.S1_x_at4/118+9464072..9467011retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17011.1.S1_at--437--5991Chr08:9442379..9442403 (25 bp)
GAGACGCTGGACTCAGAGGTCGCAC
LOC_Os08g15540
OsAffx.17011.1.S1_at--1029--5791Chr08:9442377..9442401 (25 bp)
GACGCTGGACTCAGAGGTCGCACTC
LOC_Os08g15540
OsAffx.17011.1.S1_at--800--4711Chr08:9442374..9442398 (25 bp)
GCTGGACTCAGAGGTCGCACTCGAC
LOC_Os08g15540
OsAffx.17011.1.S1_at--246--8131Chr08:9442371..9442395 (25 bp)
GGACTCAGAGGTCGCACTCGACTCA
LOC_Os08g15540
OsAffx.17011.1.S1_at--117--3431Chr08:9442366..9442390 (25 bp)
CAGAGGTCGCACTCGACTCAGAGAT
LOC_Os08g15540
OsAffx.17011.1.S1_at--816--7791Chr08:9442362..9442386 (25 bp)
GGTCGCACTCGACTCAGAGATGACG
LOC_Os08g15540
OsAffx.17011.1.S1_at--1089--5091Chr08:9442358..9442382 (25 bp)
GCACTCGACTCAGAGATGACGCTGT
LOC_Os08g15540
OsAffx.17011.1.S1_at--587--5711Chr08:9442352..9442376 (25 bp)
GACTCAGAGATGACGCTGTGGGACT
LOC_Os08g15540
OsAffx.17011.1.S1_at--216--1311Chr08:9442345..9442369 (25 bp)
AGATGACGCTGTGGGACTCAGTCGA
LOC_Os08g15540
OsAffx.17011.1.S1_at--968--8931Chr08:9442342..9442366 (25 bp)
TGACGCTGTGGGACTCAGTCGAGAT
LOC_Os08g15540
OsAffx.17011.1.S1_at--1121--7611Chr08:9442333..9442357 (25 bp)
GGGACTCAGTCGAGATGGCGCTGGA
LOC_Os08g15540
Target Sequence 
GAGACGCTGGACTCAGAGGTCGCACTCGACTCAGAGATGACGCTGTGGGACTCAGTCGAGATGGCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis