Browse Element(s) Details


OsAffx.29219.1.S1_at

Description tigr:9636.m01560
TID=OsAffx.29219.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1556011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15510OsAffx.29842.2.S1_x_at10/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.2.S1_at9/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_x_at5/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.3.S1_at4/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.29842.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15510OsAffx.16831.1.S1_at1/118+9428506..9431533transposon protein, putative, unclassified
LOC_Os08g15520OsAffx.27865.1.S1_x_at1/118+9435832..9438044transposon protein, putative, Pong sub-class
LOC_Os08g15530NANA8+9438757..9440173hypothetical protein
LOC_Os08g15540OsAffx.17011.1.S1_at11/118+9442287..9442769hypothetical protein
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein
LOC_Os08g15570NANA8+9457660..9463755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15580OsAffx.21897.5.S1_x_at4/118+9464072..9467011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15590Os.46319.1.S1_s_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.2.S1_x_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.2.S1_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.1.S1_at4/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.3.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.52575.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.9743.2.S1_x_at2/118+9469276..9474723hypothetical protein
LOC_Os08g15600Os.26733.3.S1_x_at1/118+9475529..9475939Stomatin-like protein 2, putative
LOC_Os08g15610OsAffx.29220.1.S1_at11/118+9478018..9478773hypothetical protein
LOC_Os08g15620Os.55229.1.S1_s_at1/118+9478887..9479945hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29219.1.S1_at--833--7371Chr08:9455406..9455430 (25 bp)
GGCGGCCGAAGCTCTAGGGAATTTA
LOC_Os08g15560
OsAffx.29219.1.S1_at--562--3131Chr08:9455387..9455411 (25 bp)
AATTTAGATCCGGTGGTCTCCAACT
LOC_Os08g15560
OsAffx.29219.1.S1_at--10--6631Chr08:9455361..9455385 (25 bp)
GTTGGATACCAGATCTGGCGTCCCA
LOC_Os08g15560
OsAffx.29219.1.S1_at--876--3911Chr08:9455347..9455371 (25 bp)
CTGGCGTCCCATTGTTTGTTGGCAG
LOC_Os08g15560
OsAffx.29219.1.S1_at--1060--1071Chr08:9455319..9455343 (25 bp)
AGAGGCGGCCGCTGACAACCTTAGG
LOC_Os08g15560
OsAffx.29219.1.S1_at--419--7091Chr08:9454769..9454793 (25 bp)
GTCAAACGTGCTATGTGTCGGGTGC
LOC_Os08g15560
OsAffx.29219.1.S1_at--212--7711Chr08:9454750..9454774 (25 bp)
GGGTGCACATACTGGCCTGCCACAA
LOC_Os08g15560
OsAffx.29219.1.S1_at--512--2211Chr08:9454729..9454753 (25 bp)
ACAACTGGCCCCTTATGTGTGATGG
LOC_Os08g15560
OsAffx.29219.1.S1_at--994--791Chr08:9454708..9454732 (25 bp)
ATGGGCCACATCTAGAATGGGCTCC
LOC_Os08g15560
OsAffx.29219.1.S1_at--294--8331Chr08:9454689..9454713 (25 bp)
GGCTCCAATTGAACCCATCACAAAT
LOC_Os08g15560
OsAffx.29219.1.S1_at--234--2291Chr08:9454668..9454692 (25 bp)
AAATGCGTTCACCTGTGATGAGACA
LOC_Os08g15560
Target Sequence 
GGCGGCCGAAGCTCTAGGGAATTTAGATCCGGTGGTCTCCAACTTGTTGGATACCAGATCTGGCGTCCCATTGTTTGTTG
GCAGCGGAGAGGCGGCCGCTGACAACCTTAGGGCGAAGGGTAAAAGGGTCATCTATGATGGGTCTATAGGTGAGCATGTC
AAACGTGCTATGTGTCGGGTGCACATACTGGCCTGCCACAACTGGCCCCTTATGTGTGATGGGCCACATCTAGAATGGGC
TCCAATTGAACCCATCACAAATGCGTTCACCTGTGATGAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis