Browse Element(s) Details


Os.55229.1.S1_s_at

Description gb:AK107696.1
DB_XREF= gi:32992905
TID=Os.55229.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C06, full insert sequence.
FL= gb:AK107696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1131011/11Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g156201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11270NANA7+6209977..6213153hypothetical protein
LOC_Os07g11280Os.27421.3.S1_x_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.2.S1_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.1.S1_at10/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11290Os.10247.1.S1_a_at11/117+6230936..6232846expressed protein
LOC_Os07g11300Os.34789.1.S1_at5/117+6233481..6234974hypothetical protein
LOC_Os07g11310Os.55229.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11310OsAffx.5291.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11320OsAffx.16210.1.S1_at11/117+6239668..6240299Seed allergenic protein RA17 precursor, putative
LOC_Os07g11330Os.8224.1.S1_at11/117+6242432..6243180Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11340NANA7+6244267..6246515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350Os.46314.3.S1_at3/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.7362.1.S1_x_at2/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.265.1.S1_at1/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360Os.12884.1.S1_at11/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360Os.39040.3.S1_x_at1/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370OsAffx.22462.1.S1_at11/117+6254850..6255269hypothetical protein
LOC_Os07g11380Os.5529.4.S1_x_at11/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.5.S1_x_at10/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.4.S1_s_at8/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.39040.3.S1_x_at2/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11390OsAffx.22461.2.S1_x_at7/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11390OsAffx.22461.3.S1_x_at6/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55229.1.S1_s_at--432--5611Chr07:6237853..6237877 (25 bp)
GACAATGGCGTCGAAGAACAGCAAG
LOC_Os07g11310
Os.55229.1.S1_s_at--731--2951Chr07:6237850..6237874 (25 bp)
AATGGCGTCGAAGAACAGCAAGCTC
LOC_Os07g11310
Os.55229.1.S1_s_at--916--8471Chr07:6237848..6237872 (25 bp)
TGGCGTCGAAGAACAGCAAGCTCTC
LOC_Os07g11310
Os.55229.1.S1_s_at--337--7231Chr07:6237844..6237868 (25 bp)
GTCGAAGAACAGCAAGCTCTCGGTG
LOC_Os07g11310
Os.55229.1.S1_s_at--530--5371Chr07:6237841..6237865 (25 bp)
GAAGAACAGCAAGCTCTCGGTGTCG
LOC_Os07g11310
Os.55229.1.S1_s_at--693--1431Chr07:6237839..6237863 (25 bp)
AGAACAGCAAGCTCTCGGTGTCGTC
LOC_Os07g11310
Os.55229.1.S1_s_at--105--2491Chr07:6237837..6237861 (25 bp)
AACAGCAAGCTCTCGGTGTCGTCGG
LOC_Os07g11310
Os.55229.1.S1_s_at--773--2131Chr07:6237836..6237860 (25 bp)
ACAGCAAGCTCTCGGTGTCGTCGGT
LOC_Os07g11310
Os.55229.1.S1_s_at--1107--2671Chr07:6237831..6237855 (25 bp)
AAGCTCTCGGTGTCGTCGGTGGCGG
LOC_Os07g11310
Os.55229.1.S1_s_at--153--7792Chr08:9479646..9479669 (24 bp)
GGTGCGGGCGCGGTGCTGCCACCAG
LOC_Os08g15620
Os.55229.1.S1_s_at--740--7312Chr11:19353206..19353230 (25 bp)
GTGCTGCCACCAGCTGAGGGAGGTG
NONE
Target Sequence 
GACAATGGCGTCGAAGAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCG
GCGCCGTCGTCGCGACGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGCGAGCCGGGG
CAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCCGGG
GGTGCGGGCGCGGTGCTGCCACCAGCTGAGGGAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55229.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis