Browse Element(s) Details


Os.39040.3.S1_x_at

Description gb:AU163943
DB_XREF= gi:11171752
DB_XREF=AU163943
CLONE=E11548
TID=Os.39040.3
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) allergen RA5B precursor (OJ1779_B07.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1151011/11Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g113802/11Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g113601/11Seed allergenic protein RA17 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11480Os.1709.1.S1_x_at11/117+6306382..6310864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11480Os.31497.2.S1_x_at1/117+6306382..6310864retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11490Os.18191.1.S1_at11/117+6314018..6316359expressed protein
LOC_Os07g11500Os.40855.2.S1_x_at10/117+6326841..6329366hypothetical protein
LOC_Os07g11500Os.40855.4.S1_x_at3/117+6326841..6329366hypothetical protein
LOC_Os07g11510Os.39040.3.S1_x_at11/117+6334472..6335224Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g11510Os.5529.4.S1_x_at1/117+6334472..6335224Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g11520OsAffx.25936.1.S1_s_at11/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11520OsAffx.25936.7.S1_s_at11/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11520OsAffx.25936.2.S1_x_at5/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11520OsAffx.25936.5.S1_x_at2/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11530NANA7+6347576..6348028hypothetical protein
LOC_Os07g11540Os.10827.1.S1_x_at11/117+6348777..6351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11540Os.46055.2.S1_x_at6/117+6348777..6351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11550NANA7+6356773..6357589hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39040.3.S1_x_at--1025--3093Chr07:6335082..6335106 (25 bp)
AATATGGCTTCCAACAAGGTAGTGT
LOC_Os07g11510
Os.39040.3.S1_x_at--53--1031Chr07:6335066..6335090 (25 bp)
AGGTAGTGTTCTCAGTGTTGCTTCT
LOC_Os07g11510
Os.39040.3.S1_x_at--754--10071Chr07:6335063..6335087 (25 bp)
TAGTGTTCTCAGTGTTGCTTCTCGC
LOC_Os07g11510
Os.39040.3.S1_x_at--729--8791Chr07:6335060..6335084 (25 bp)
TGTTCTCAGTGTTGCTTCTCGCCGT
LOC_Os07g11510
Os.39040.3.S1_x_at--321--9651Chr07:6335055..6335079 (25 bp)
TCAGTGTTGCTTCTCGCCGTCGTCT
LOC_Os07g11510
Os.39040.3.S1_x_at--444--1731Chr07:6335010..6335034 (25 bp)
ACCATGGCGGAGTACCACCACCAAG
LOC_Os07g11510
Os.39040.3.S1_x_at--821--8031Chr07:6335002..6335026 (25 bp)
GGAGTACCACCACCAAGACCAGGTG
LOC_Os07g11510
Os.39040.3.S1_x_at--363--3231Chr07:6334989..6335013 (25 bp)
CAAGACCAGGTGGTCTACACCCCGG
LOC_Os07g11510
Os.39040.3.S1_x_at--402--8732Chr07:6334956..6334980 (25 bp)
TGTCAGCCAGGAATGGGCTACCCGA
LOC_Os07g11510
Os.39040.3.S1_x_at--261--3471Chr07:6334804..6334828 (25 bp)
CAGGTGCGAGGCGATCAGCCACATG
LOC_Os07g11510
Os.39040.3.S1_x_at--100--9151Chr07:6334800..6334824 (25 bp)
TGCGAGGCGATCAGCCACATGCTGG
LOC_Os07g11510
Target Sequence 
AATATGGCTTCCAACAAGGTAGTGTTCTCAGTGTTGCTTCTCGCCGTCGTCTCCGTGCTCGCGGCGACGGCGACCATGGC
GGAGTACCACCACCAAGACCAGGTGGTCTACACCCCGGGCCCGCTCTGTCAGCCAGGAATGGGCTACCCGATGTACCCGC
TCCCGCGTTGCCGGGCGTTGGTGAAGCGCCAGTGCGTCGGCCGTGGCACGGCCGCCGCCGCCGAGCAGGTCCGGCGAGAC
TGCTGCCGGCAGCTCGCCGCCGTCGACGACAGCTGGTGCAGGTGCGAGGCGATCAGCCACATGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39040.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis