Browse Element(s) Details


Os.1709.1.S1_x_at

Description gb:CR292663
DB_XREF= gi:44679229
DB_XREF=CR292663
CLONE=y770g07p3
TID=Os.1709.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative polyprotein (OSJNBa0051C19.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1836011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g1148011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g3255011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g2581011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g1646011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g1564011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g0615011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g1234011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g353909/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g116207/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g089107/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g461807/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g110907/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g195207/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g258906/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g306806/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g342606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g274006/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g332306/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g180405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g282405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g150104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g285604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g298803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g220101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18294Os.45173.1.S1_x_at3/1110+8964379..8971113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18310NANA10+8972985..8973530hypothetical protein
LOC_Os10g18330OsAffx.18286.1.S1_at11/1110+8980933..8981682hypothetical protein
LOC_Os10g18340Os.12787.1.S1_at11/1110+8984080..8984965expressed protein
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g18380OsAffx.30446.1.S1_at11/1110+9010894..9011933hypothetical protein
LOC_Os10g18390OsAffx.2524.1.S1_at9/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_x_at2/1110+9014097..9017101hypothetical protein
LOC_Os10g18390Os.56255.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18390OsAffx.19264.1.S1_at1/1110+9014097..9017101hypothetical protein
LOC_Os10g18400Os.46702.1.S1_at11/1110+9017673..9025056Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1709.1.S1_x_at--45--23121Chr11:16859790..16859814 (25 bp)
AAATGGCCAGAGGAATTGCTATCGG
LOC_Os11g29880
Os.1709.1.S1_x_at--188--8723Chr11:16859792..16859815 (24 bp)
ATGGCCAGAGGAATTGCTATCGGTT
LOC_Os11g29880
Os.1709.1.S1_x_at--181--84519Chr10:7879055..7879079 (25 bp)
GGCCAGAGGAATTGCTATCGGTTCT
LOC_Os10g16460
Os.1709.1.S1_x_at--477--61922Chr11:16859799..16859942 (25 bp)
GAGGAATTGCTATCGGTTCTCTGGG
LOC_Os11g29880
Os.1709.1.S1_x_at--1057--9320Chr10:7879061..7879085 (25 bp)
AGGAATTGCTATCGGTTCTCTGGGC
LOC_Os10g16460
Os.1709.1.S1_x_at--453--52120Chr12:18399714..18399738 (25 bp)
GAATTGCTATCGGTTCTCTGGGCCC
LOC_Os12g30680
Os.1709.1.S1_x_at--163--721Chr12:18399716..18399740 (25 bp)
ATTGCTATCGGTTCTCTGGGCCCTT
LOC_Os12g30680
Os.1709.1.S1_x_at--39--32118Chr12:18399764..18399788 (25 bp)
CAAGTTTAGCCCGTTTATGCTTCTT
LOC_Os12g30680
Os.1709.1.S1_x_at--220--68317Chr12:18399767..18399791 (25 bp)
GTTTAGCCCGTTTATGCTTCTTTAT
LOC_Os12g30680
Os.1709.1.S1_x_at--1027--104517Chr12:18399769..18399793 (25 bp)
TTAGCCCGTTTATGCTTCTTTATGG
LOC_Os12g30680
Os.1709.1.S1_x_at--828--99917Chr12:18399770..18399794 (25 bp)
TAGCCCGTTTATGCTTCTTTATGGC
LOC_Os12g30680
Target Sequence 
AAATGGCCAGAGGAATTGCTATCGGTTCTCTGGGCCCTTCGGACGACCCCCACAAGACCAACCAAGTTTAGCCCGTTTAT
GCTTCTTTATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1709.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis