Browse Element(s) Details


OsAffx.19264.1.S1_at

Description tigr:9639.m03650
TID=OsAffx.19264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3996011/11hypothetical protein
LOC_Os10g183901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39920OsAffx.19263.1.S1_at11/1111+23290653..23294477expressed protein
LOC_Os11g39929NANA11+23294732..23295345NA
LOC_Os11g39940NANA11+23297256..23299466hAT family dimerisation domain containing protein
LOC_Os11g39950OsAffx.22385.1.S1_x_at4/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950OsAffx.20329.1.S1_at2/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950Os.46862.1.S1_at1/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39960OsAffx.19264.1.S1_at11/1111+23318311..23318802hypothetical protein
LOC_Os11g39969NANA11+23327976..23328433NA
LOC_Os11g39980OsAffx.31399.1.S1_at11/1111+23335801..23337085Zinc knuckle family protein
LOC_Os11g39990Os.49524.1.S1_at9/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.8523.1.S1_at3/1111+23343292..23347200Patatin-like phospholipase family protein, expressed
LOC_Os11g39990Os.46576.1.S1_x_at1/1111+23343292..23347200Patatin-like phospholipase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19264.1.S1_at--1082--9211Chr11:23318389..23318413 (25 bp)
TCCACCTCCACTAGTTGTTGCAATG
LOC_Os11g39960
OsAffx.19264.1.S1_at--345--10752Chr11:23318406..23318430 (25 bp)
TTGCAATGCTGAGAGGCGTTCTCCT
LOC_Os11g39960
OsAffx.19264.1.S1_at--1151--1311Chr11:23318417..23318441 (25 bp)
AGAGGCGTTCTCCTCAGCATGGCCT
LOC_Os11g39960
OsAffx.19264.1.S1_at--59--1351Chr11:23318477..23318501 (25 bp)
AGAGATGCAGCTGTGTTGTTCCTTC
LOC_Os11g39960
OsAffx.19264.1.S1_at--673--1591Chr11:23318485..23318509 (25 bp)
AGCTGTGTTGTTCCTTCGGACCACA
LOC_Os11g39960
OsAffx.19264.1.S1_at--220--613Chr11:23318551..23318575 (25 bp)
ATGCCCTCGTCGTCTGCACTGGTCA
LOC_Os11g39960
OsAffx.19264.1.S1_at--904--1672Chr11:23318581..23318605 (25 bp)
AGCCACTCGGGTCTTCTTCGTCTAC
LOC_Os11g39960
OsAffx.19264.1.S1_at--253--1791Chr11:23318683..23318707 (25 bp)
ACCGACGTTGCTGTCCAGGCTGTTG
LOC_Os11g39960
OsAffx.19264.1.S1_at--243--8711Chr11:23318694..23318718 (25 bp)
TGTCCAGGCTGTTGGTCCCGTTACT
LOC_Os11g39960
OsAffx.19264.1.S1_at--506--6771Chr11:23318713..23318737 (25 bp)
GTTACTTCGCCTTTGTCTTCGTCCA
LOC_Os11g39960
OsAffx.19264.1.S1_at--606--7271Chr11:23318733..23318757 (25 bp)
GTCCAGCATGTCTCATCACCAGCAT
LOC_Os11g39960
Target Sequence 
TCCACCTCCACTAGTTGTTGCAATGCTGAGAGGCGTTCTCCTCAGCATGGCCTCACCGCCGATGAGTTCACGCCGCTGCA
TCGACATAAGAGATGCAGCTGTGTTGTTCCTTCGGACCACAGCCTCGTCCCTCTCGTCGTCTTCATCGCCGTTCGCGTTT
CGATGCCCTCGTCGTCTGCACTGGTCATCGTCAGCCACTCGGGTCTTCTTCGTCTACTTCGAGCATCGTCACCGCATCTC
CAAGCTGCCACTATCACCGCTCTAGGCCGGTGGTCCAGCTACCTCTACATGGCCACCGACGTTGCTGTCCAGGCTGTTGG
TCCCGTTACTTCGCCTTTGTCTTCGTCCAGCATGTCTCATCACCAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis