Browse Element(s) Details


OsAffx.19263.1.S1_at

Description tigr:9639.m03645
TID=OsAffx.19263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3992011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39870Os.46314.2.S1_x_at2/1111+23262725..23268858retrotransposon protein, putative, unclassified
LOC_Os11g39880NANA11+23271211..23273188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39890NANA11+23274522..23275732retrotransposon protein, putative, unclassified
LOC_Os11g39900NANA11+23276356..23279647retrotransposon protein, putative, unclassified
LOC_Os11g39910OsAffx.31398.1.S1_at10/1111+23286579..23287444hypothetical protein
LOC_Os11g39920OsAffx.19263.1.S1_at11/1111+23290653..23294477expressed protein
LOC_Os11g39929NANA11+23294732..23295345NA
LOC_Os11g39940NANA11+23297256..23299466hAT family dimerisation domain containing protein
LOC_Os11g39950OsAffx.22385.1.S1_x_at4/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950OsAffx.20329.1.S1_at2/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39950Os.46862.1.S1_at1/1111+23305139..23311000retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39960OsAffx.19264.1.S1_at11/1111+23318311..23318802hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19263.1.S1_at--591--7391Chr11:23293883..23293907 (25 bp)
GTGATAGGCAATATAACTCTCCGGA
LOC_Os11g39920
OsAffx.19263.1.S1_at--866--2531Chr11:23293897..23293921 (25 bp)
AACTCTCCGGATATGATCGTACGTC
LOC_Os11g39920
OsAffx.19263.1.S1_at--230--7951Chr11:23293905..23293929 (25 bp)
GGATATGATCGTACGTCATCGGAGT
LOC_Os11g39920
OsAffx.19263.1.S1_at--11--6351Chr11:23293911..23293935 (25 bp)
GATCGTACGTCATCGGAGTAGACCT
LOC_Os11g39920
OsAffx.19263.1.S1_at--88--1891Chr11:23293917..23293941 (25 bp)
ACGTCATCGGAGTAGACCTGCACTT
LOC_Os11g39920
OsAffx.19263.1.S1_at--1038--491Chr11:23293922..23293946 (25 bp)
ATCGGAGTAGACCTGCACTTACCAC
LOC_Os11g39920
OsAffx.19263.1.S1_at--1026--6071Chr11:23293926..23293950 (25 bp)
GAGTAGACCTGCACTTACCACAGCT
LOC_Os11g39920
OsAffx.19263.1.S1_at--946--2031Chr11:23293938..23293962 (25 bp)
ACTTACCACAGCTCGCAAGGTCTGT
LOC_Os11g39920
OsAffx.19263.1.S1_at--875--3391Chr11:23293946..23293970 (25 bp)
CAGCTCGCAAGGTCTGTGTGGAGTT
LOC_Os11g39920
OsAffx.19263.1.S1_at--836--3211Chr11:23293953..23293977 (25 bp)
CAAGGTCTGTGTGGAGTTGCTCAAT
LOC_Os11g39920
OsAffx.19263.1.S1_at--844--7471Chr11:23293961..23293985 (25 bp)
GTGTGGAGTTGCTCAATATCCCAGA
LOC_Os11g39920
Target Sequence 
GTGATAGGCAATATAACTCTCCGGATATGATCGTACGTCATCGGAGTAGACCTGCACTTACCACAGCTCGCAAGGTCTGT
GTGGAGTTGCTCAATATCCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis