Browse Element(s) Details


OsAffx.18286.1.S1_at

Description tigr:9638.m01524
TID=OsAffx.18286.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1833011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18294Os.45173.1.S1_x_at3/1110+8964379..8971113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18310NANA10+8972985..8973530hypothetical protein
LOC_Os10g18330OsAffx.18286.1.S1_at11/1110+8980933..8981682hypothetical protein
LOC_Os10g18340Os.12787.1.S1_at11/1110+8984080..8984965expressed protein
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18286.1.S1_at--651--3291Chr10:8981486..8981510 (25 bp)
CAAAGTTTCGAACGTCATGCGGAGA
LOC_Os10g18330
OsAffx.18286.1.S1_at--1110--7351Chr10:8981352..8981376 (25 bp)
GTGAACCACGCATTGATCAACCAGT
LOC_Os10g18330
OsAffx.18286.1.S1_at--1158--7691Chr10:8981324..8981348 (25 bp)
GGGTCTTGGTCAATACACTTGCTAA
LOC_Os10g18330
OsAffx.18286.1.S1_at--338--10771Chr10:8981282..8981306 (25 bp)
TTGATGGATCCATTGCTGAGCACGA
LOC_Os10g18330
OsAffx.18286.1.S1_at--325--7111Chr10:8981248..8981272 (25 bp)
GTCAGTTTACTTGCCGGGTGGAGAA
LOC_Os10g18330
OsAffx.18286.1.S1_at--92--8031Chr10:8981190..8981214 (25 bp)
GGAGGTGGCCGTTTTCAAGACAATA
LOC_Os10g18330
OsAffx.18286.1.S1_at--365--6291Chr10:8981107..8981131 (25 bp)
GATGATACCCGAAAAGCTGGCTGAA
LOC_Os10g18330
OsAffx.18286.1.S1_at--868--8511Chr10:8981062..8981086 (25 bp)
TGGAAGTACACAACCATCGGCTACC
LOC_Os10g18330
OsAffx.18286.1.S1_at--578--8311Chr10:8981044..8981068 (25 bp)
GGCTACCGAGCCGATTGCAAGACGA
LOC_Os10g18330
OsAffx.18286.1.S1_at--979--9631Chr10:8980983..8981007 (25 bp)
TCAGGGCAGCCGATTGGTTCTCATA
LOC_Os10g18330
OsAffx.18286.1.S1_at--1134--7871Chr10:8980968..8980992 (25 bp)
GGTTCTCATACAATCAGGCCACAAT
LOC_Os10g18330
Target Sequence 
CAAAGTTTCGAACGTCATGCGGAGAAGGGGAAGGATCTTGTACGAAAGACATCAAGGTTGAACAAGATGAGGAGATGCAA
AAGGTTCTCACCAAATTCAATCAACTGGCGATTCAAGATCATGTTGATTCAGCTGTGAACCACGCATTGATCAACCAGTC
TAGGGTCTTGGTCAATACACTTGCTAATTTGATCAAGTCAGTGGTTGATGGATCCATTGCTGAGCACGAGGAGAGAGGGT
CAGTTTACTTGCCGGGTGGAGAATTTCCTAACTATAGAGAACTCAAGACTAGCATTGGAGGTGGCCGTTTTCAAGACAAT
AATGTGATGGTTTCAAGATCGAAGCAGCCACCGACATCAGGGGTTTTTGGTTCAAACACGATGATACCCGAAAAGCTGGC
TGAAATACTTAAGAGTGTAATACCTGGAAGTACACAACCATCGGCTACCGAGCCGATTGCAAGACGACCACCAGTCATTC
CTCAGCCTCACACTCAGCAGCCTTCAGGGCAGCCGATTGGTTCTCATACAATCAGGCCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis