Browse Element(s) Details


Os.5529.5.S1_x_at

Description gb:D42140.1
DB_XREF= gi:1398914
TID=Os.5529.5
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) seed allergen RAG2 (OJ1116_C08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) mRNA for allergenic protein, partial cds, clone RA14c.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1138010/11Seed allergenic protein RA14 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11290Os.10247.1.S1_a_at11/117+6230936..6232846expressed protein
LOC_Os07g11300Os.34789.1.S1_at5/117+6233481..6234974hypothetical protein
LOC_Os07g11310Os.55229.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11310OsAffx.5291.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11320OsAffx.16210.1.S1_at11/117+6239668..6240299Seed allergenic protein RA17 precursor, putative
LOC_Os07g11330Os.8224.1.S1_at11/117+6242432..6243180Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11340NANA7+6244267..6246515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350Os.46314.3.S1_at3/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.7362.1.S1_x_at2/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.265.1.S1_at1/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360Os.12884.1.S1_at11/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360Os.39040.3.S1_x_at1/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370OsAffx.22462.1.S1_at11/117+6254850..6255269hypothetical protein
LOC_Os07g11380Os.5529.4.S1_x_at11/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.5.S1_x_at10/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.4.S1_s_at8/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.39040.3.S1_x_at2/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11390OsAffx.22461.2.S1_x_at7/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11390OsAffx.22461.3.S1_x_at6/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11400NANA7+6266830..6272708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11410Os.7449.2.S1_x_at11/117+6274377..6275121Seed allergenic protein RA5 precursor, putative, expressed
LOC_Os07g11420NANA7+6281884..6285344transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5529.5.S1_x_at--789--3491Chr07:6257818..6257842 (25 bp)
CATGGCGGACCACCACAAAGACCAG
LOC_Os07g11380
Os.5529.5.S1_x_at--996--2751Chr07:6257801..6257825 (25 bp)
AAGACCAGGTGGTGTACAGCCTCGG
LOC_Os07g11380
Os.5529.5.S1_x_at--220--1731Chr07:6257798..6257822 (25 bp)
ACCAGGTGGTGTACAGCCTCGGCGA
LOC_Os07g11380
Os.5529.5.S1_x_at--443--8751Chr07:6257789..6257813 (25 bp)
TGTACAGCCTCGGCGAGCGTTGTCA
LOC_Os07g11380
Os.5529.5.S1_x_at--581--8991Chr07:6257714..6257738 (25 bp)
TGAAGCGCCAGTGCGTGGGCCACGG
LOC_Os07g11380
Os.5529.5.S1_x_at--549--1771Chr07:6257556..6257580 (25 bp)
ACCGATGTTGGGCACCCCATGGCCG
LOC_Os07g11380
Os.5529.5.S1_x_at--1021--9911NONE
TACTGGCTAGGTTATACCCCTAGGA
NONE
Os.5529.5.S1_x_at--504--8591Chr07:6257397..6257422 (25 bp)
TGGTCACTAGGCTACTAAGCTAGCT
LOC_Os07g11380
Os.5529.5.S1_x_at--1127--3691Chr07:6257391..6257416 (25 bp)
CTAGGCTACTAAGCTAGCTGTGTGT
LOC_Os07g11380
Os.5529.5.S1_x_at--355--10071Chr07:6257340..6257364 (25 bp)
TAGTGCTTTCATTTGTCAGGAAGCA
LOC_Os07g11380
Os.5529.5.S1_x_at--1139--3571Chr07:6257331..6257355 (25 bp)
CATTTGTCAGGAAGCATATATACAT
LOC_Os07g11380
Target Sequence 
CATGGCGGACCACCACAAAGACCAGGTGGTGTACAGCCTCGGCGAGCGTTGTCANNNNNGNNANNNNNNNNNNNCNNGAT
GTACTCGCTGCCACGCTGCCGGNGCGGTGGTGAAGCGCCAGTGCGTGGGCCACGGCGCACCCGGCGGCGCNGNNNNNNAG
CAACTCCGGCAGNNNTGCTGCCGNNAGCTCGCCGCGGTCGACGACAGCTGGTGCAGGTGCTCGGCGCTCAACCACATGGT
TGGAGGCATCTACAGGGAGCTCGGCGCCACCGATGTTGGGCACCCCATGGCCGAGGTGTTCCCCGGCTGCCGGAGAGGGG
ACTTGGAGCGCGCGGCGGCGAGCCTCCCGGCGTTCTGCAACGTGGNNNNNNCCNNNNNGNNANNTGGTGTCTGCTACTGG
CTAGGTTATACCCCTAGGACCCCGAGAACTGGTCACTAGGCTACTAAGCTAGCTGTGTGTATGACTCTGTGGGGTTGCTA
AATAACTAGTGCTTTCATTTGTCAGGAAGCATATATACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5529.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis