Browse Element(s) Details

Os.12884.1.S1_at

Description

gb:D11431.1
DB_XREF= gi:218194
GEN=RA17
TID=Os.12884.1
CNT=79
FEA=FLmRNA
TIER=FL+Stack
STK=46
UG=Os.12884 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RA17 gene for allergenic protein, complete cds.
PROD=allergenic protein
FL= gb:D11431.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g11360	11/11	Seed allergenic protein RA17 precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g11280	Os.27421.3.S1_x_at	11/11	7	+	6220475..6229969	pentatricopeptide, putative, expressed
LOC_Os07g11280	Os.27421.2.S1_at	11/11	7	+	6220475..6229969	pentatricopeptide, putative, expressed
LOC_Os07g11280	Os.27421.1.S1_at	10/11	7	+	6220475..6229969	pentatricopeptide, putative, expressed
LOC_Os07g11290	Os.10247.1.S1_a_at	11/11	7	+	6230936..6232846	expressed protein
LOC_Os07g11300	Os.34789.1.S1_at	5/11	7	+	6233481..6234974	hypothetical protein
LOC_Os07g11310	Os.55229.1.S1_s_at	11/11	7	+	6237226..6237915	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11310	OsAffx.5291.1.S1_s_at	11/11	7	+	6237226..6237915	Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11320	OsAffx.16210.1.S1_at	11/11	7	+	6239668..6240299	Seed allergenic protein RA17 precursor, putative
LOC_Os07g11330	Os.8224.1.S1_at	11/11	7	+	6242432..6243180	Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11340	NA	NA	7	+	6244267..6246515	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350	Os.46314.3.S1_at	3/11	7	+	6247396..6250725	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350	OsAffx.7362.1.S1_x_at	2/11	7	+	6247396..6250725	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350	OsAffx.265.1.S1_at	1/11	7	+	6247396..6250725	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360	Os.12884.1.S1_at	11/11	7	+	6253178..6253853	Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360	Os.39040.3.S1_x_at	1/11	7	+	6253178..6253853	Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370	OsAffx.22462.1.S1_at	11/11	7	+	6254850..6255269	hypothetical protein
LOC_Os07g11380	Os.5529.4.S1_x_at	11/11	7	+	6257217..6257962	Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380	Os.5529.5.S1_x_at	10/11	7	+	6257217..6257962	Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380	Os.5529.4.S1_s_at	8/11	7	+	6257217..6257962	Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380	Os.39040.3.S1_x_at	2/11	7	+	6257217..6257962	Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11390	OsAffx.22461.2.S1_x_at	7/11	7	+	6261596..6264615	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11390	OsAffx.22461.3.S1_x_at	6/11	7	+	6261596..6264615	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11400	NA	NA	7	+	6266830..6272708	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11410	Os.7449.2.S1_x_at	11/11	7	+	6274377..6275121	Seed allergenic protein RA5 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12884.1.S1_at--484--953	1	Chr07:6253701..6253725 (25 bp)	TCTACAGCCCCGGTGAGCAATGTCG	LOC_Os07g11360
Os.12884.1.S1_at--957--397	1	Chr07:6253691..6253715 (25 bp)	CGGTGAGCAATGTCGGCCAGGAATA	LOC_Os07g11360
Os.12884.1.S1_at--56--299	1	Chr07:6253683..6253707 (25 bp)	AATGTCGGCCAGGAATAAGCTATCC	LOC_Os07g11360
Os.12884.1.S1_at--458--309	1	Chr07:6253670..6253694 (25 bp)	AATAAGCTATCCGACATACTCACTC	LOC_Os07g11360
Os.12884.1.S1_at--917--567	1	Chr07:6253658..6253682 (25 bp)	GACATACTCACTCCCGCAATGTCGA	LOC_Os07g11360
Os.12884.1.S1_at--263--299	1	Chr07:6253641..6253665 (25 bp)	AATGTCGAACATTGGTGAGGCGCCA	LOC_Os07g11360
Os.12884.1.S1_at--683--547	1	Chr07:6253635..6253659 (25 bp)	GAACATTGGTGAGGCGCCAATGCGT	LOC_Os07g11360
Os.12884.1.S1_at--415--757	1	Chr07:6253518..6253542 (25 bp)	GGGCGCTCGATCACATGCTGTCAGG	LOC_Os07g11360
Os.12884.1.S1_at--1140--643	1	Chr07:6253510..6253534 (25 bp)	GATCACATGCTGTCAGGCATCTACA	LOC_Os07g11360
Os.12884.1.S1_at--1020--847	1	Chr07:6253342..6253366 (25 bp)	TGGCTTGGGTATCCTAGGACCCCAA	LOC_Os07g11360
Os.12884.1.S1_at--133--491	1	Chr07:6253340..6253364 (25 bp)	GCTTGGGTATCCTAGGACCCCAAGA	LOC_Os07g11360

Target Sequence

TCTACAGCCCCGGTGAGCAATGTCGGCCAGGAATAAGCTATCCGACATACTCACTCCCGCAATGTCGAACATTGGTGAGG
CGCCAATGCGTNTGGCCGTGGCGCGGCCAGCGCCGCGGANCGAGCAAGTCTGGCAAGACTGCTGCCGGCAGCTCGCCGCC
GTCGACGACGGCTGGTGCAGGTGCGGGGCGCTCGATCACATGCTGTCAGGCATCTACAGGGAGCTCGGCGCCACCGAGGC
CGGGCACCCCATGGCCGAGGTGTTCCCCGGCTGCCGGAGAGGGGACTTGGAGCGCGCGGCGGCGAGCCTCCCGGCGTTCT
GCAACGTGGACATCCCCAATGGGCCTGGTGGTGTCTGCTACTGGCTTGGGTATCCTAGGACCCCAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis