Browse Element(s) Details


Os.27421.1.S1_at

Description gb:AK120512.1
DB_XREF= gi:37990135
TID=Os.27421.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU069907(E11940)~similar to salt-inducible protein (OJ1116_C08.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123O09, full insert sequence.
FL= gb:AK120512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1128010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11250OsAffx.28400.1.S1_at11/117+6199394..6200252hypothetical protein
LOC_Os07g11260OsAffx.22699.1.S1_x_at2/117+6202853..6209350retrotransposon protein, putative, unclassified
LOC_Os07g11270NANA7+6209977..6213153hypothetical protein
LOC_Os07g11280Os.27421.3.S1_x_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.2.S1_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.1.S1_at10/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11290Os.10247.1.S1_a_at11/117+6230936..6232846expressed protein
LOC_Os07g11300Os.34789.1.S1_at5/117+6233481..6234974hypothetical protein
LOC_Os07g11310Os.55229.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11310OsAffx.5291.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11320OsAffx.16210.1.S1_at11/117+6239668..6240299Seed allergenic protein RA17 precursor, putative
LOC_Os07g11330Os.8224.1.S1_at11/117+6242432..6243180Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11340NANA7+6244267..6246515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350Os.46314.3.S1_at3/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.7362.1.S1_x_at2/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.265.1.S1_at1/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360Os.12884.1.S1_at11/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360Os.39040.3.S1_x_at1/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370OsAffx.22462.1.S1_at11/117+6254850..6255269hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27421.1.S1_at--976--6751Chr07:6221046..6221070 (25 bp)
GTTAAGATCTACTGAAGCGTTGTTT
LOC_Os07g11280
Os.27421.1.S1_at--658--7331Chr07:6220961..6220985 (25 bp)
GTGCATATATATTCTCTTTGAGGGT
LOC_Os07g11280
Os.27421.1.S1_at--481--3011Chr07:6220897..6220921 (25 bp)
AATGCAAAGCGTTTCTCATCCGCTC
LOC_Os07g11280
Os.27421.1.S1_at--1092--9311Chr07:6220852..6220876 (25 bp)
TCCCATTTGTCTCTACAGAACGACT
LOC_Os07g11280
Os.27421.1.S1_at--671--1891Chr07:6220780..6220804 (25 bp)
ACTCTGAAAAGTAGCCCGGAAACTG
LOC_Os07g11280
Os.27421.1.S1_at--793--4531Chr07:6220767..6220791 (25 bp)
GCCCGGAAACTGCATCTCATTTTGA
LOC_Os07g11280
Os.27421.1.S1_at--608--7511Chr07:6220665..6220689 (25 bp)
GTGGAGACGAACTGCATACCTTCAA
LOC_Os07g11280
Os.27421.1.S1_at--1126--8831Chr07:6220612..6220636 (25 bp)
TGATCATATTTTGCGTCTCCAGGCT
LOC_Os07g11280
Os.27421.1.S1_at--866--2571Chr07:6220571..6220595 (25 bp)
AACGATTCATGCTCAAGTTGGCTTT
LOC_Os07g11280
Os.27421.1.S1_at--857--6611Chr07:6220555..6220579 (25 bp)
GTTGGCTTTCATGCATTAGTGGTTA
LOC_Os07g11280
Os.27421.1.S1_at--215--6051Chr07:6220475..6220499 (25 bp)
GAGATATGCACTTCTCTACTACTTT
NONE
Target Sequence 
GTTAAGATCTACTGAAGCGTTGTTTNGGTGCTTCAAGAATGAGGTTGACACTTGTGGATGATATAGCTTGTAGGTAGCTA
ATACAGTGCATATATATTCTCTTTGAGGGTACATAGACAGTGTGGATGACAAATGGAATATGAAAGAAAAATGCAAAGCG
TTTCTCATCCGCTCTTTTGCAGCTCACCCCGCCTTCCCATTTGTCTCTACAGAACGACTAATTCATCACATATGAACACA
ATGTAATTGAGCATATAATTAAGTAAACTCTGAAAAGTAGCCCGGAAACTGCATCTCATTTTGATGATTCAAGGGGAGAA
GGTCAAGATGTGCTTCATAGGGGAAATGGGGAATTTTGATTATCAAGGGGAGAAGGCAAGGGTGGAGACGAACTGCATAC
CTTCAAACAGTATATAAAATTCTGAACGTTTGCATGATCATATTTTGCGTCTCCAGGCTCCAGCAAACTAAGCTAAACGA
TTCATGCTCAAGTTGGCTTTCATGCATTAGTGGTTAATAAAGCAAATGTGTATTGCGAAAGCTGTATTATTATGTGGCAT
ATTTGGTCTTTGAGATATGCACTTCTCTACTACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis