Browse Element(s) Details


OsAffx.28400.1.S1_at

Description gb:NM_186493.1
DB_XREF= gi:34900071
TID=OsAffx.28400.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1664_D08.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1125011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11220NANA7+6174985..6178617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11230NANA7+6178933..6181866retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.4.S1_x_at9/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.5.S1_x_at7/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.1.S1_x_at7/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11240OsAffx.5954.3.S1_x_at3/117+6185322..6192650retrotransposon protein, putative, unclassified
LOC_Os07g11250OsAffx.28400.1.S1_at11/117+6199394..6200252hypothetical protein
LOC_Os07g11260OsAffx.22699.1.S1_x_at2/117+6202853..6209350retrotransposon protein, putative, unclassified
LOC_Os07g11270NANA7+6209977..6213153hypothetical protein
LOC_Os07g11280Os.27421.3.S1_x_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.2.S1_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.1.S1_at10/117+6220475..6229969pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28400.1.S1_at--831--5891Chr07:6199577..6199601 (25 bp)
GAGCTGGCCCAGGATGCGACCGACG
LOC_Os07g11250
OsAffx.28400.1.S1_at--318--2551Chr07:6199643..6199667 (25 bp)
AACGACACTGTAGGGAGGCGGCCGG
LOC_Os07g11250
OsAffx.28400.1.S1_at--1033--5891Chr07:6199695..6199719 (25 bp)
GAGCTCCAGTGACGAGCGACGCTCA
LOC_Os07g11250
OsAffx.28400.1.S1_at--698--7711Chr07:6199725..6199749 (25 bp)
GGGTGTACGAGCTCGGTCGCGACCT
LOC_Os07g11250
OsAffx.28400.1.S1_at--127--5871Chr07:6199858..6199882 (25 bp)
GAGCTCCGGCGAGGTTTTCGACGGT
LOC_Os07g11250
OsAffx.28400.1.S1_at--942--4191Chr07:6199894..6199918 (25 bp)
CCCGTGGTACGGCACAGTGCAACGA
LOC_Os07g11250
OsAffx.28400.1.S1_at--368--7851Chr07:6199899..6199923 (25 bp)
GGTACGGCACAGTGCAACGACGCTG
LOC_Os07g11250
OsAffx.28400.1.S1_at--551--8911Chr07:6199927..6199951 (25 bp)
TGACCATCGTGGCTCGGGATGGCGG
LOC_Os07g11250
OsAffx.28400.1.S1_at--974--7291Chr07:6200090..6200114 (25 bp)
GTGCGGCGGTGACCCAAGCGGTGGT
LOC_Os07g11250
OsAffx.28400.1.S1_at--590--3851Chr07:6200124..6200148 (25 bp)
CTGAACGACACTGGTGAGCGGCTGA
LOC_Os07g11250
OsAffx.28400.1.S1_at--711--7591Chr07:6200188..6200212 (25 bp)
GGGAAAACGGAGTGGCGGCCTGGCT
LOC_Os07g11250
Target Sequence 
GAGCTGGCCCAGGATGCGACCGACGAAGCGGAGAAAGAGGGAGAGGGAGGGGAGCGCTCATCGGGGAACGACACTGTAGG
GAGGCGGCCGGCGAAGCTCGAGGCGGAGGGAGGCGGCGGAGCTCCAGTGACGAGCGACGCTCAGGAAGGGGTGTACGAGC
TCGGTCGCGACCTGGGGATGGGGTTTAAAGGGGTTAGGGAAGCGCGGGGTGGCCGGAACAGCGAGGAAGGATGGCCGAAG
GCGATGAGGGTGGCGGAGCTCACCGGCGAGCGAGGGAGATGGAGCTCCGGCGAGGTTTTCGACGGTGTGGGGCGGTGCCC
GTGGTACGGCACAGTGCAACGACGCTGGGGTGACCATCGTGGCTCGGGATGGCGGTGCGGCGGTGACCCAAGCGGTGGTG
GTGGGCGGCTGAACGACACTGGTGAGCGGCTGAGGTTGGTGGCGCGGTGGGGCGGCTTTTCGATGGTGGTGGGGGAAAAC
GGAGTGGCGGCCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis