Browse Element(s) Details


OsAffx.22462.1.S1_at

Description gb:NM_186505.1
DB_XREF= gi:34900095
GEN=OJ1116_C08.12
TID=OsAffx.22462.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 10, OJ1004_F02.13 (OJ1116_C08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1137011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11280Os.27421.3.S1_x_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.2.S1_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.1.S1_at10/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11290Os.10247.1.S1_a_at11/117+6230936..6232846expressed protein
LOC_Os07g11300Os.34789.1.S1_at5/117+6233481..6234974hypothetical protein
LOC_Os07g11310Os.55229.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11310OsAffx.5291.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11320OsAffx.16210.1.S1_at11/117+6239668..6240299Seed allergenic protein RA17 precursor, putative
LOC_Os07g11330Os.8224.1.S1_at11/117+6242432..6243180Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11340NANA7+6244267..6246515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350Os.46314.3.S1_at3/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.7362.1.S1_x_at2/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.265.1.S1_at1/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360Os.12884.1.S1_at11/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360Os.39040.3.S1_x_at1/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370OsAffx.22462.1.S1_at11/117+6254850..6255269hypothetical protein
LOC_Os07g11380Os.5529.4.S1_x_at11/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.5.S1_x_at10/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.4.S1_s_at8/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.39040.3.S1_x_at2/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11390OsAffx.22461.2.S1_x_at7/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11390OsAffx.22461.3.S1_x_at6/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11400NANA7+6266830..6272708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11410Os.7449.2.S1_x_at11/117+6274377..6275121Seed allergenic protein RA5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22462.1.S1_at--1099--6631Chr07:6254880..6254904 (25 bp)
GTTGATGGCTTACGTCTTAGTAAGA
LOC_Os07g11370
OsAffx.22462.1.S1_at--1015--7251Chr07:6254923..6254947 (25 bp)
GTCCAATTATGCACAGCCATGCTAA
LOC_Os07g11370
OsAffx.22462.1.S1_at--844--2151Chr07:6254935..6254959 (25 bp)
ACAGCCATGCTAAGAAAATACAACT
LOC_Os07g11370
OsAffx.22462.1.S1_at--940--3671Chr07:6255032..6255056 (25 bp)
CTTTGTCTTGCTAAGGTTTACATCG
LOC_Os07g11370
OsAffx.22462.1.S1_at--273--4831Chr07:6255041..6255065 (25 bp)
GCTAAGGTTTACATCGGAAGACATC
LOC_Os07g11370
OsAffx.22462.1.S1_at--260--3951Chr07:6255055..6255079 (25 bp)
CGGAAGACATCATTACTACGCCAAG
LOC_Os07g11370
OsAffx.22462.1.S1_at--1092--6151Chr07:6255096..6255120 (25 bp)
GAGGATGACAAGAGTTACACCGAGC
LOC_Os07g11370
OsAffx.22462.1.S1_at--868--8951Chr07:6255101..6255125 (25 bp)
TGACAAGAGTTACACCGAGCAGGAA
LOC_Os07g11370
OsAffx.22462.1.S1_at--537--9851Chr07:6255111..6255135 (25 bp)
TACACCGAGCAGGAATTAGCCCATG
LOC_Os07g11370
OsAffx.22462.1.S1_at--253--931Chr07:6255121..6255145 (25 bp)
AGGAATTAGCCCATGCACTACCAGC
LOC_Os07g11370
OsAffx.22462.1.S1_at--383--152Chr09:5951635..5951654 (20 bp)
ATTAGCCCATGCACTACCAGCAGCT
NONE
Target Sequence 
GTTGATGGCTTACGTCTTAGTAAGAACGATCAAACATATCATGGTCCAATTATGCACAGCCATGCTAAGAAAATACAACT
AGAGGTGAACTCACTCTTTGCTCAACTTAACCCAAATTTTAATGAGAATTTTATACTACCTAAATATTCTACCTTTGTCT
TGCTAAGGTTTACATCGGAAGACATCATTACTACGCCAAGAAGGATGGGTTATGTTGAGGATGACAAGAGTTACACCGAG
CAGGAATTAGCCCATGCACTACCAGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis