Browse Element(s) Details


OsAffx.16210.1.S1_at

Description tigr:9635.m01106
TID=OsAffx.16210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protease inhibitorseed storageLTP family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1132011/11Seed allergenic protein RA17 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11280Os.27421.3.S1_x_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.2.S1_at11/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11280Os.27421.1.S1_at10/117+6220475..6229969pentatricopeptide, putative, expressed
LOC_Os07g11290Os.10247.1.S1_a_at11/117+6230936..6232846expressed protein
LOC_Os07g11300Os.34789.1.S1_at5/117+6233481..6234974hypothetical protein
LOC_Os07g11310Os.55229.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11310OsAffx.5291.1.S1_s_at11/117+6237226..6237915Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11320OsAffx.16210.1.S1_at11/117+6239668..6240299Seed allergenic protein RA17 precursor, putative
LOC_Os07g11330Os.8224.1.S1_at11/117+6242432..6243180Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11340NANA7+6244267..6246515transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350Os.46314.3.S1_at3/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.7362.1.S1_x_at2/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11350OsAffx.265.1.S1_at1/117+6247396..6250725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11360Os.12884.1.S1_at11/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11360Os.39040.3.S1_x_at1/117+6253178..6253853Seed allergenic protein RA17 precursor, putative, expressed
LOC_Os07g11370OsAffx.22462.1.S1_at11/117+6254850..6255269hypothetical protein
LOC_Os07g11380Os.5529.4.S1_x_at11/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.5.S1_x_at10/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.5529.4.S1_s_at8/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11380Os.39040.3.S1_x_at2/117+6257217..6257962Seed allergenic protein RA14 precursor, putative, expressed
LOC_Os07g11390OsAffx.22461.2.S1_x_at7/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11390OsAffx.22461.3.S1_x_at6/117+6261596..6264615retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16210.1.S1_at--666--10111Chr07:6240088..6240112 (25 bp)
TATGGTTCTTAGTGTTGCTCTCGAT
LOC_Os07g11320
OsAffx.16210.1.S1_at--604--1111Chr07:6240078..6240102 (25 bp)
AGTGTTGCTCTCGATAGTTGTCTCC
LOC_Os07g11320
OsAffx.16210.1.S1_at--693--2451Chr07:6240036..6240060 (25 bp)
AACAATGGCAGACCACCACTGCTAG
LOC_Os07g11320
OsAffx.16210.1.S1_at--765--1691Chr07:6239996..6240020 (25 bp)
AGCCAGCTTTGCCAGCCAAGAATAG
LOC_Os07g11320
OsAffx.16210.1.S1_at--801--271Chr07:6239975..6239999 (25 bp)
ATAGACTACTCGATGTGTACCCACT
LOC_Os07g11320
OsAffx.16210.1.S1_at--257--9331Chr07:6239951..6239975 (25 bp)
TCCCACGCTGCCGAACAATGGTGAA
LOC_Os07g11320
OsAffx.16210.1.S1_at--241--4491Chr07:6239901..6239925 (25 bp)
GCCGGTAACGTGGATGAGCAAGTCT
LOC_Os07g11320
OsAffx.16210.1.S1_at--525--2851Chr07:6239882..6239906 (25 bp)
AAGTCTGGCGAGACTGCTGTAGGCA
LOC_Os07g11320
OsAffx.16210.1.S1_at--516--2511Chr07:6239838..6239862 (25 bp)
AACTTATGTAGGTGTCCGGTGCTCA
LOC_Os07g11320
OsAffx.16210.1.S1_at--176--4251Chr07:6239823..6239847 (25 bp)
CCGGTGCTCAGCCACAAGTTGGTAG
LOC_Os07g11320
OsAffx.16210.1.S1_at--484--5871Chr07:6239701..6239725 (25 bp)
GAGCCTCCTGGCATTATGCGGTGTG
LOC_Os07g11320
Target Sequence 
TATGGTTCTTAGTGTTGCTCTCGATAGTTGTCTCCATGCTTGTGGCAACGACAACAATGGCAGACCACCACTGCTAGGTG
GTGTATACCCCCAGCCAGCTTTGCCAGCCAAGAATAGACTACTCGATGTGTACCCACTCCCACGCTGCCGAACAATGGTG
AAGGGCCAGTGCATTGGCGGTGGCGCAGCCGGTAACGTGGATGAGCAAGTCTGGCGAGACTGCTGTAGGCAGCTCGCCAC
CATCAACAACAACTTATGTAGGTGTCCGGTGCTCAGCCACAAGTTGGTAGGCATGTACAAGGAGCTCGGCACGGCGGCTC
ACGGGCAACCCATGGACGAGGTATTCCCTGGCTGCCGGAGAGACAACATGAAATGCATGGTGGTGGCGAGCCTCCTGGCA
TTATGCGGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis