Browse Element(s) Details


OsAffx.2057.3.S1_at

Description tigr:9629.m02117
TID=OsAffx.2057.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2208010/11hypothetical protein
LOC_Os02g572301/11retrotransposon protein, putative, unclassified
LOC_Os11g369701/11Zinc finger, C3HC4 type family protein
LOC_Os02g491001/11retrotransposon protein, putative, unclassified
LOC_Os08g022401/11retrotransposon protein, putative, unclassified
LOC_Os01g286601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22039OsAffx.23333.1.S1_at11/111+12358077..12360921hypothetical protein
LOC_Os01g22039OsAffx.23333.2.S1_x_at10/111+12358077..12360921hypothetical protein
LOC_Os01g22050Os.46012.2.S1_x_at3/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.46012.3.S1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.27088.1.A1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22070Os.5189.2.S1_at8/111+12376503..12379688transposon protein, putative, Mutator sub-class
LOC_Os01g22070Os.5189.1.S1_at7/111+12376503..12379688transposon protein, putative, Mutator sub-class
LOC_Os01g22080OsAffx.2057.3.S1_at10/111+12380623..12384109hypothetical protein
LOC_Os01g22080OsAffx.29218.1.S1_s_at8/111+12380623..12384109hypothetical protein
LOC_Os01g22080OsAffx.15653.1.S1_at3/111+12380623..12384109hypothetical protein
LOC_Os01g22080OsAffx.13325.1.S1_at1/111+12380623..12384109hypothetical protein
LOC_Os01g22090Os.54201.1.S1_x_at11/111+12386006..12390484expressed protein
LOC_Os01g22090Os.54201.1.S1_at11/111+12386006..12390484expressed protein
LOC_Os01g22090Os.54201.2.S1_x_at11/111+12386006..12390484expressed protein
LOC_Os01g22100NANA1+12390805..12393215retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22110NANA1+12394038..12396511retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22120NANA1+12400289..12402211retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g22129NANA1+12406898..12408445NA

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2057.3.S1_at--992--7771Chr01:12381246..12381270 (25 bp)
GGTGCTGGCTTTATCCGAATGAATT
LOC_Os01g22080
OsAffx.2057.3.S1_at--851--5271NONE
GAATGAATTTGCGACGCACCTCCTT
NONE
OsAffx.2057.3.S1_at--58--2391Chr01:12382016..12382040 (25 bp)
AAACGGACTCGCCTTGCAGCAAGAA
LOC_Os01g22080
OsAffx.2057.3.S1_at--1131--5231Chr01:12382038..12382062 (25 bp)
GAATCTTTTTGCTCGTTTTTGCTTC
LOC_Os01g22080
OsAffx.2057.3.S1_at--176--1471Chr01:12382064..12382088 (25 bp)
AGAATGGCGGAATAGTGGCTCTTGC
LOC_Os01g22080
OsAffx.2057.3.S1_at--777--3951Chr01:12382088..12382112 (25 bp)
CGGAGCCAAATCTCGACAGAGCCGA
LOC_Os01g22080
OsAffx.2057.3.S1_at--466--5331Chr01:12382142..12382166 (25 bp)
GAAGTGCACGTGAGTCGATCTCGAC
LOC_Os01g22080
OsAffx.2057.3.S1_at--351--7691Chr01:12382227..12382251 (25 bp)
GGGTTTCTTGACAACGGTCAGCTTG
LOC_Os01g22080
OsAffx.2057.3.S1_at--361--1471Chr01:12382550..12382574 (25 bp)
AGAATGCATTCCCAGATTTCCCCTA
LOC_Os01g22080
OsAffx.2057.3.S1_at--677--4291Chr01:12382571..12382595 (25 bp)
CCTATGGTCTTCCAAACGCTCAGGT
LOC_Os01g22080
OsAffx.2057.3.S1_at--100--8712Chr11:21318726..21318750 (25 bp)
AGACCACGGTTATGCAACTATTTGC
LOC_Os11g36970
Target Sequence 
GGTGCTGGCTTTATCCGAATGAATTTGCGACGCACCTCCTTGCACTCGTTGGCGGCGCCGGTGAGGGCCGCCTCCGCATC
TTATCGGCCGCCGAAAGGAAAGGAAACGGACTCGCCTTGCAGCAAGAATCTTTTTGCTCGTTTTTGCTTCAAGAATGGCG
GAATAGTGGCTCTTGCGGAGCCAAATCTCGACAGAGCCGAGGAGAGGAGAGCCTCACGGATGGGGACTAGAAGTGCACGT
GAGTCGATCTCGACGGCAAAGGTGAGCAGCAGCCGGTGGCTAGCGGACGCCCCTCTCCCGGGCGTGGCGATGATGGGTTT
CTTGACAACGGTCAGCTTGGCCTCCGTGCAAGCGAGGGCTCGGCGATGGCTTGGGATGCCCGAGAAGAATGCATTCCCAG
ATTTCCCCTATGGTCTTCCAAACGCTCAGGTTATTTTCAGGGCAACTCATTGGCTCCGGTTTTGGGCACAACTACAAAGG
TGTGATGAAGATGAAGATTTTCTGAAGGTTGCATGCCGAAAGTTGGAGACCACGGTTATGCAACTATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2057.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis