Browse Element(s) Details


Os.40598.1.S1_x_at

Description gb:NM_193939.1
DB_XREF= gi:34914961
GEN=OSJNBa0091E23.23
TID=Os.40598.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40598 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) LEC14B like-protein (OSJNBa0091E23.23), mRNA.
PROD=LEC14B like-protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2868010/11LEC14B homolog, putative, expressed
LOC_Os07g251202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28640OsAffx.8876.1.S1_at11/111+16351833..16352405retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g28650OsAffx.25778.2.S1_at9/111+16357073..16357549hypothetical protein
LOC_Os01g28660OsAffx.29218.1.S1_s_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.380.1.S1_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.2057.3.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.13325.1.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28670NANA1+16368048..16369095hypothetical protein
LOC_Os01g28680Os.9116.1.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680OsAffx.21117.2.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_x_at10/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_at4/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0009910biological_processnegative regulation of flower development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40598.1.S1_x_at--1077--5411Chr01:16379696..16379720 (25 bp)
GAAGCCCGATATTTCAAGCATCCAT
LOC_Os01g28680
Os.40598.1.S1_x_at--254--10631Chr01:16379772..16379796 (25 bp)
TTCGTTGCTATTTTTCCCCAATACA
LOC_Os01g28680
Os.40598.1.S1_x_at--639--2793Chr01:16380647..16380671 (25 bp)
AAGAGGTGTAGCCTTGTCTCTCTGC
LOC_Os01g28680
Os.40598.1.S1_x_at--159--9032Chr01:16380681..16381124 (25 bp)
TGCACAAAACACACATCATTCCAGA
LOC_Os01g28680
Os.40598.1.S1_x_at--387--2436Chr12:10264863..10264887 (25 bp)
AAAAGGGCAGTTCTTCCTGTCCTGA
NONE
Os.40598.1.S1_x_at--738--6533Chr12:10264886..10264907 (22 bp)
GATTTCACATTTTGCTATCCCCTGA
NONE
Os.40598.1.S1_x_at--547--3671Chr01:16381215..16381592 (25 bp)
CTTATTCATCGTCAGTTCTCTTAGA
LOC_Os01g28680
Os.40598.1.S1_x_at--671--8431Chr01:16381633..16381657 (25 bp)
GGCCTATGCGTCTAACTCTTGTGTT
LOC_Os01g28680
Os.40598.1.S1_x_at--345--8831Chr01:16381682..16381706 (25 bp)
TGATTCTTCTCTTTTTGCAGCACGG
LOC_Os01g28680
Os.40598.1.S1_x_at--808--5091NONE
GCACGGGTCAGAGAAATTCAGCAGA
NONE
Os.40598.1.S1_x_at--564--1931Chr01:16382774..16382798 (25 bp)
ACGGCAGGGTCCTCAATGCTTGGAA
LOC_Os01g28680
Target Sequence 
GAAGCCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTTAGAGGGCATTCAGTGTTACGTACACTAATTCG
TTGCTATTTTTCCCCAATACACAGGTATTGCCAACAGCTGATGCTGAAAGGACATAAAAAGAAGAGGTGTAGCCTTGTCT
CTCTGCAGTTCGCATTGCACAAAACACACATCATTCCAGAAAAGGGCAGTTCTTCCTGTCCTGATTTCACATTTTGCTAT
CCCCTGAATATGTCTACAAGAGTTGTGATGTCCCTCCACCAAAAAGAACCCTTATTCATCGTCAGTTCTCTTAGATTTAT
GGTGCAATCCATGGGAGTAAAAGGCTTTTTCTGGGGGCCTATGCGTCTAACTCTTGTGTTTTTATTATTAGTTAATACTG
TTTCTGATTCTTCTCTTTTTGCAGCACGGGTCAGAGAAATTCAGCAGACGGCAGGGTCCTCAATGCTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40598.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis