Browse Element(s) Details


OsAffx.28601.3.S1_x_at

Description tigr:9632.m02382
TID=OsAffx.28601.3
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2872010/11hypothetical protein
LOC_Os04g2543010/11hypothetical protein
LOC_Os02g2888010/11hypothetical protein
LOC_Os08g418709/11hypothetical protein
LOC_Os02g342809/11hypothetical protein
LOC_Os07g265608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28680Os.9116.1.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680OsAffx.21117.2.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_x_at10/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_at4/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein
LOC_Os01g28730OsAffx.23435.1.S1_at11/111+16413616..16415538serine/threonine protein kinase, putative, expressed
LOC_Os01g28740Os.41695.5.S1_x_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.15.S1_s_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.2.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.3.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.4.S1_x_at1/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28601.3.S1_x_at--132--8957Chr02:20502721..20502745 (25 bp)
TGACACCTTGCACACCCTAAATAGA
LOC_Os02g34280
OsAffx.28601.3.S1_x_at--147--2176Chr02:20502732..20502756 (25 bp)
ACACCCTAAATAGACCGATGTGCGG
LOC_Os02g34280
OsAffx.28601.3.S1_x_at--397--4055Chr02:20502747..20502771 (25 bp)
CGATGTGCGGCAATGAATTAACGGT
LOC_Os02g34280
OsAffx.28601.3.S1_x_at--231--3155Chr02:17085394..17085418 (25 bp)
AATTAACGGTGTCGCTCGTGGTGCA
LOC_Os02g28880
OsAffx.28601.3.S1_x_at--763--4791NONE
GCTCGTGGTGCAACGCCTGTACAAG
NONE
OsAffx.28601.3.S1_x_at--149--9856Chr02:20503725..20503749 (25 bp)
TACAAGGGGTCAGCGCCAAATACAT
LOC_Os02g34280
OsAffx.28601.3.S1_x_at--649--30914Chr08:26304465..26304485 (21 bp)
AATACATTGGCGCTGAGGCCCTGCC
NONE
OsAffx.28601.3.S1_x_at--279--84714Chr08:26304509..26304532 (24 bp)
TGGCGCGATGTCAGCGCCAGTCCCA
NONE
OsAffx.28601.3.S1_x_at--1110--44112Chr08:19977398..19977417 (20 bp)
GCCAGTCCCATTGGCGCTGATATGA
NONE
OsAffx.28601.3.S1_x_at--695--7236Chr02:20503810..20503834 (25 bp)
GTCCCATTGGCGCTGATATGAACAA
LOC_Os02g34280
OsAffx.28601.3.S1_x_at--956--16Chr02:20503815..20503839 (25 bp)
ATTGGCGCTGATATGAACAACCTCA
LOC_Os02g34280
Target Sequence 
TGACACCTTGCACACCCTAAATAGACCGATGTGCGGCAATGAATTAACGGTGTCGCTCGTGGTGCAACGCCTGTACAAGG
GGTCAGCGCCAAATACATTGGCGCTGAGGCCCTGCCACGTCGCGTCTCGCCCGCCACGCTGGCGCGATGTCAGCGCCAGT
CCCATTGGCGCTGATATGAACAACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28601.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis