Browse Element(s) Details


OsAffx.23435.1.S1_at

Description tigr:9629.m02756
TID=OsAffx.23435.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2873011/11serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein
LOC_Os01g28730OsAffx.23435.1.S1_at11/111+16413616..16415538serine/threonine protein kinase, putative, expressed
LOC_Os01g28740Os.41695.5.S1_x_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.15.S1_s_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.2.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.3.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.4.S1_x_at1/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23435.1.S1_at--729--8931Chr01:16414944..16414968 (25 bp)
TGACGACTTTGAGGCCATGGTGGCT
LOC_Os01g28730
OsAffx.23435.1.S1_at--274--6911Chr01:16415055..16415079 (25 bp)
GTATGCACTGTATGGCCAATTGACT
LOC_Os01g28730
OsAffx.23435.1.S1_at--1110--1071Chr01:16415137..16415161 (25 bp)
AGGGCATTTATCTCTCTTGGTGAAG
LOC_Os01g28730
OsAffx.23435.1.S1_at--724--7771Chr01:16415155..16415179 (25 bp)
GGTGAAGGCCAGAACTTTGTGCTCA
LOC_Os01g28730
OsAffx.23435.1.S1_at--916--5271Chr01:16415237..16415261 (25 bp)
GAATGGTTGAGCCTGGTCCTACTGA
LOC_Os01g28730
OsAffx.23435.1.S1_at--780--2831Chr01:16415272..16415296 (25 bp)
AAGTATGTACTTGTCGCAGCACTCT
LOC_Os01g28730
OsAffx.23435.1.S1_at--283--1612Chr01:16415309..16415333 (25 bp)
AGCTGCACGCTAGGCCAACAATGGA
LOC_Os01g28730
OsAffx.23435.1.S1_at--846--5031Chr01:16415356..16415380 (25 bp)
GCAGATTCAGCGTCAGGTCCTTTAA
LOC_Os01g28730
OsAffx.23435.1.S1_at--793--10491Chr01:16415399..16415423 (25 bp)
TTCCGGTAGTCGCAAACCTGGCTGA
LOC_Os01g28730
OsAffx.23435.1.S1_at--245--1031Chr01:16415454..16415478 (25 bp)
AGGTCAGCTGTTTAGTCCCTCTGGT
LOC_Os01g28730
OsAffx.23435.1.S1_at--611--8551Chr01:16415475..16415499 (25 bp)
TGGTTTCCGGTCTTTTACTCATATA
LOC_Os01g28730
Target Sequence 
TGACGACTTTGAGGCCATGGTGGCTGATTTCGGATTGGCCAAGTTTGCACCGGAAGGGATGACGCATGTGAGCACAAGGG
TTGCTGGCACGCTGGGTTATGTCGCTCCAGAGTATGCACTGTATGGCCAATTGACTGAGAAGAGTGATGTCTATAGCTTC
GGAGTTGTACTTCTTGAGCTTCTAAGTGGAAAGAGGGCATTTATCTCTCTTGGTGAAGGCCAGAACTTTGTGCTCAGTGA
ATGGGCTTGGTTATTGGTCCGGAGGGGGAAGACAGTGGATGTGATCCAAGAAGGAATGGTTGAGCCTGGTCCTACTGAGG
TAATGGAGAAGTATGTACTTGTCGCAGCACTCTGCACGCATCCTCAGCTGCACGCTAGGCCAACAATGGATCAAGTGGTG
AAGATACTAGAGGCAGATTCAGCGTCAGGTCCTTTAATTATTCCGGAGCGGCCTCTTCCGGTAGTCGCAAACCTGGCTGA
GATTGAGAGATCAGCCAGTAGCAGTGGCTCAGGTCAGCTGTTTAGTCCCTCTGGTTTCCGGTCTTTTACTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis