Browse Element(s) Details


Os.32272.1.S1_s_at

Description gb:AK072730.1
DB_XREF= gi:32982753
TID=Os.32272.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to Arabidopsis thaliana chromosome 1, F14N23.29 (OSJNBa0091E23.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142A05, full insert sequence.
FL= gb:AK072730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2869011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28660OsAffx.29218.1.S1_s_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.380.1.S1_at2/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.2057.3.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28660OsAffx.13325.1.S1_at1/111+16359956..16365764hypothetical protein
LOC_Os01g28670NANA1+16368048..16369095hypothetical protein
LOC_Os01g28680Os.9116.1.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680OsAffx.21117.2.S1_at11/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_x_at10/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28680Os.40598.1.S1_at4/111+16373558..16383134LEC14B homolog, putative, expressed
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein
LOC_Os01g28730OsAffx.23435.1.S1_at11/111+16413616..16415538serine/threonine protein kinase, putative, expressed
LOC_Os01g28740Os.41695.5.S1_x_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.15.S1_s_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.2.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.3.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.4.S1_x_at1/111+16416430..16421986transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009910biological_processnegative regulation of flower development
GO:0005634cellular_componentnucleus
GO:0005215molecular_functiontransporter activity
GO:0015288molecular_functionporin activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32272.1.S1_s_at--181--8551Chr01:16394081..16394105 (25 bp)
TGGAGTTCAATGAGCGTGAGATTAT
LOC_Os01g28690
Os.32272.1.S1_s_at--1108--5331Chr01:16394319..16394343 (25 bp)
GAAGTTCAGGGTTAAGAATTTCAAT
LOC_Os01g28690
Os.32272.1.S1_s_at--729--7171Chr01:16394393..16394417 (25 bp)
GTCTGGTAGAAGTAACAACATAGTA
LOC_Os01g28690
Os.32272.1.S1_s_at--334--7051Chr01:16394404..16394428 (25 bp)
GTAACAACATAGTAATCCTGTAAAA
LOC_Os01g28690
Os.32272.1.S1_s_at--910--10191Chr01:16394440..16394464 (25 bp)
TTTGTAGTTCGGTCACTTGGTACGG
LOC_Os01g28690
Os.32272.1.S1_s_at--388--1231Chr01:16394445..16394469 (25 bp)
AGTTCGGTCACTTGGTACGGATAGC
LOC_Os01g28690
Os.32272.1.S1_s_at--59--3971Chr01:16394449..16394473 (25 bp)
CGGTCACTTGGTACGGATAGCTGGA
LOC_Os01g28690
Os.32272.1.S1_s_at--422--9931Chr01:16394460..16394484 (25 bp)
TACGGATAGCTGGATACTTCTGGAC
LOC_Os01g28690
Os.32272.1.S1_s_at--659--6491Chr01:16394464..16394488 (25 bp)
GATAGCTGGATACTTCTGGACGAAA
LOC_Os01g28690
Os.32272.1.S1_s_at--720--4711Chr01:16394468..16394492 (25 bp)
GCTGGATACTTCTGGACGAAATAAC
LOC_Os01g28690
Os.32272.1.S1_s_at--688--2031Chr01:16394475..16394499 (25 bp)
ACTTCTGGACGAAATAACTTTAGCT
LOC_Os01g28690
Target Sequence 
TGGAGTTCAATGAGCGTGAGATTATTGTGTACAGAGATGTGAGCAATACGCCGCCTGTTGGGCAGGAACTCAACAAGCCT
GCTGAAGTCACTCTTCTGAATGTCAAGTGCGTCGAACAGAAGAATGGGTTGCAGTTCACAGAGGGGCCGGCAGTTGATAG
GTACAAGGAGATTTTGGTGCAGTGGACAAAGGACCATGGCGCAGAATTTGTGTCATTTGACGCGGCCAAGGGAGAATGGA
AGTTCAGGGTTAAGAATTTCAATATGTAGAGTCCTCTGAGAATCTATAATTCTCCTATCAGTAGGCTCCTGTGTCTGGTA
GAAGTAACAACATAGTAATCCTGTAAAAAATGTGTTCTTTTTGTAGTTCGGTCACTTGGTACGGATAGCTGGATACTTCT
GGACGAAATAACTTTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32272.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis