Browse Element(s) Details


OsAffx.28601.3.S1_at

Description tigr:9632.m02382
TID=OsAffx.28601.3
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g265608/11hypothetical protein
LOC_Os01g287208/11hypothetical protein
LOC_Os02g288808/11hypothetical protein
LOC_Os08g418708/11hypothetical protein
LOC_Os04g254308/11hypothetical protein
LOC_Os02g342807/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26510OsAffx.24286.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26510OsAffx.380.1.S1_at1/117+15273516..15277442retrotransposon protein, putative, unclassified
LOC_Os07g26520Os.7365.2.S1_x_at11/117+15278272..15281145expressed protein
LOC_Os07g26520Os.7365.1.S1_at11/117+15278272..15281145expressed protein
LOC_Os07g26530Os.19146.1.S1_at1/117+15283051..15283492hypothetical protein
LOC_Os07g26534NANA7+15288562..15290496NA
LOC_Os07g26540OsAffx.22372.1.S1_at11/117+15291521..15293017Hexokinase 1, putative
LOC_Os07g26550OsAffx.16424.1.S1_s_at11/117+15293198..15294636expressed protein
LOC_Os07g26560OsAffx.28601.1.S1_at11/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26560OsAffx.28601.3.S1_x_at8/117+15296184..15300358hypothetical protein
LOC_Os07g26570OsAffx.16425.1.S1_at11/117+15302826..15303435hypothetical protein
LOC_Os07g26579OsAffx.503.1.S1_at3/117+15304976..15305220NA
LOC_Os07g26590OsAffx.22370.1.S1_at7/117+15307222..15307476hypothetical protein
LOC_Os07g26600OsAffx.5451.2.S1_s_at11/117+15319861..15321403hypothetical protein
LOC_Os07g26600OsAffx.5451.1.S1_x_at4/117+15319861..15321403hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28601.3.S1_at--229--9351NONE
TCGCTCGTGGTGCAACGCCTGTACA
NONE
OsAffx.28601.3.S1_at--762--4791NONE
GCTCGTGGTGCAACGCCTGTACAAG
NONE
OsAffx.28601.3.S1_at--136--3791NONE
CTCGTGGTGCAACGCCTGTACAAGG
NONE
OsAffx.28601.3.S1_at--774--7037Chr02:20503724..20503748 (25 bp)
GTACAAGGGGTCAGCGCCAAATACA
LOC_Os02g34280
OsAffx.28601.3.S1_at--875--7699Chr12:1423688..1423709 (22 bp)
GGGTCAGCGCCAAATACATTGGCGC
NONE
OsAffx.28601.3.S1_at--735--8877Chr02:20503756..20503780 (25 bp)
TGAGGCCCTGCCACGTCGCGTCTCG
LOC_Os02g34280
OsAffx.28601.3.S1_at--892--45113Chr08:26304498..26304522 (25 bp)
GCCCGCCACGCTGGCGCGATGTCAG
NONE
OsAffx.28601.3.S1_at--1109--44112Chr08:19977398..19977417 (20 bp)
GCCAGTCCCATTGGCGCTGATATGA
NONE
OsAffx.28601.3.S1_at--694--7236Chr02:20503810..20503834 (25 bp)
GTCCCATTGGCGCTGATATGAACAA
LOC_Os02g34280
OsAffx.28601.3.S1_at--136--4336Chr02:20503813..20503837 (25 bp)
CCATTGGCGCTGATATGAACAACCT
LOC_Os02g34280
OsAffx.28601.3.S1_at--955--16Chr02:20503815..20503839 (25 bp)
ATTGGCGCTGATATGAACAACCTCA
LOC_Os02g34280
Target Sequence 
TCGCTCGTGGTGCAACGCCTGTACAAGGGGTCAGCGCCAAATACATTGGCGCTGAGGCCCTGCCACGTCGCGTCTCGCCC
GCCACGCTGGCGCGATGTCAGCGCCAGTCCCATTGGCGCTGATATGAACAACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28601.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis