Browse Element(s) Details


OsAffx.24286.1.S1_at

Description tigr:9630.m01600
TID=OsAffx.24286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1713011/11hypothetical protein
LOC_Os07g265101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17100NANA2+9790302..9793607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17110Os.47463.1.S1_x_at6/112+9796796..9800496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17110Os.14491.2.S1_x_at5/112+9796796..9800496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17120NANA2+9806920..9807201transposon protein, putative, unclassified
LOC_Os02g17130OsAffx.24286.1.S1_at11/112+9810025..9810805hypothetical protein
LOC_Os02g17130OsAffx.13325.1.S1_at1/112+9810025..9810805hypothetical protein
LOC_Os02g17140OsAffx.32056.1.S1_x_at7/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.1.S1_s_at5/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.32056.1.S1_at3/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.3.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.4.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.2.S1_at1/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17150OsAffx.24287.1.S1_at11/112+9826265..9829110Subtilase family protein, expressed
LOC_Os02g17160Os.47463.1.S1_x_at6/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17160Os.14491.2.S1_x_at4/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24286.1.S1_at--891--4874Chr10:6650588..6650666 (25 bp)
GCTATTGTCCGAAGGAAATCATCTT
NONE
OsAffx.24286.1.S1_at--727--8151Chr02:9810735..9810759 (25 bp)
GGAAATCATCTTCAATTGCAACTGT
LOC_Os02g17130
OsAffx.24286.1.S1_at--745--3071Chr02:9810732..9810756 (25 bp)
AATCATCTTCAATTGCAACTGTTAT
LOC_Os02g17130
OsAffx.24286.1.S1_at--408--5151Chr02:9810718..9810742 (25 bp)
GCAACTGTTATGAGATCTGTACCGC
LOC_Os02g17130
OsAffx.24286.1.S1_at--495--1971Chr02:9810715..9810739 (25 bp)
ACTGTTATGAGATCTGTACCGCTTA
LOC_Os02g17130
OsAffx.24286.1.S1_at--961--6771Chr02:9810712..9810736 (25 bp)
GTTATGAGATCTGTACCGCTTAATG
LOC_Os02g17130
OsAffx.24286.1.S1_at--50--711Chr02:9810709..9810733 (25 bp)
ATGAGATCTGTACCGCTTAATGTTT
LOC_Os02g17130
OsAffx.24286.1.S1_at--767--471Chr02:9810704..9810728 (25 bp)
ATCTGTACCGCTTAATGTTTCTTTC
LOC_Os02g17130
OsAffx.24286.1.S1_at--866--3571Chr02:9810603..9810696 (25 bp)
CTTTAGTTGATAGCTTTAGGTGGAA
LOC_Os02g17130
OsAffx.24286.1.S1_at--1037--411Chr02:9810576..9810600 (25 bp)
ATCATCAGAATGGTGGGTTCTCGGT
LOC_Os02g17130
OsAffx.24286.1.S1_at--827--3412Chr09:14855824..14856281 (25 bp)
CAGAATGGTGGGTTCTCGGTAATTT
NONE
Target Sequence 
GCTATTGTCCGAAGGAAATCATCTTCAATTGCAACTGTTATGAGATCTGTACCGCTTAATGTTTCTTTCAGAAGAGCTTT
AGTTGATAGCTTTAGGTGGAATTATCATCAGAATGGTGGGTTCTCGGTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis