Browse Element(s) Details


OsAffx.24287.1.S1_at

Description tigr:9630.m01603
TID=OsAffx.24287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Subtilase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1715011/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17120NANA2+9806920..9807201transposon protein, putative, unclassified
LOC_Os02g17130OsAffx.24286.1.S1_at11/112+9810025..9810805hypothetical protein
LOC_Os02g17130OsAffx.13325.1.S1_at1/112+9810025..9810805hypothetical protein
LOC_Os02g17140OsAffx.32056.1.S1_x_at7/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.1.S1_s_at5/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.32056.1.S1_at3/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.3.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.4.S1_s_at2/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17140OsAffx.10637.2.S1_at1/112+9814039..9821798transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17150OsAffx.24287.1.S1_at11/112+9826265..9829110Subtilase family protein, expressed
LOC_Os02g17160Os.47463.1.S1_x_at6/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17160Os.14491.2.S1_x_at4/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17170OsAffx.2649.1.S1_at11/112+9836945..9838024hypothetical protein
LOC_Os02g17180OsAffx.24288.1.S1_at11/112+9838335..9839477F-box domain containing protein
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24287.1.S1_at--995--8911Chr02:9826778..9826802 (25 bp)
TGACCGTTTTGGCATACCAATCCAA
LOC_Os02g17150
OsAffx.24287.1.S1_at--864--7731Chr02:9826711..9826735 (25 bp)
GGTGGTGGCCACATTGAATCAGATA
LOC_Os02g17150
OsAffx.24287.1.S1_at--155--10031Chr02:9826688..9826712 (25 bp)
TAGAGCGGTTGACCCTGGTTTAGTC
LOC_Os02g17150
OsAffx.24287.1.S1_at--316--6091Chr02:9826645..9826669 (25 bp)
GAGTACGCTAAGTTCTACAACTGCA
LOC_Os02g17150
OsAffx.24287.1.S1_at--822--2191Chr02:9826629..9826653 (25 bp)
ACAACTGCAGTATCAACCCCAAGGA
LOC_Os02g17150
OsAffx.24287.1.S1_at--533--2111Chr02:9826590..9826614 (25 bp)
ACATGAGGCAACTTTACCAGCTCAA
LOC_Os02g17150
OsAffx.24287.1.S1_at--564--6411Chr02:9826543..9826567 (25 bp)
GATCTCAAGTACTCTGTCACGGTTT
LOC_Os02g17150
OsAffx.24287.1.S1_at--1151--8371Chr02:9826518..9826542 (25 bp)
GGCGAACCATCATCAACATCGGAGT
LOC_Os02g17150
OsAffx.24287.1.S1_at--588--3191Chr02:9826473..9826497 (25 bp)
CAATGCTTGAGGCACCAGTCGGTAT
LOC_Os02g17150
OsAffx.24287.1.S1_at--72--8931Chr02:9826449..9826473 (25 bp)
TGACCATGTCTGTGGAACCTTCAGT
LOC_Os02g17150
OsAffx.24287.1.S1_at--435--991Chr02:9826297..9826321 (25 bp)
AGAATTCCTATTGCGGTTCGTACCA
LOC_Os02g17150
Target Sequence 
TGACCGTTTTGGCATACCAATCCAAGCCGAGGGAGTGCCAAGGAAAGTGGCTGACCCATTCGACTTCGGTGGTGGCCACA
TTGAATCAGATAGAGCGGTTGACCCTGGTTTAGTCTATGATATAGATCCAAGAGAGTACGCTAAGTTCTACAACTGCAGT
ATCAACCCCAAGGATGAATGTGAGTCATACATGAGGCAACTTTACCAGCTCAACCTCCCATCCATCGTCGTACCAGATCT
CAAGTACTCTGTCACGGTTTGGCGAACCATCATCAACATCGGAGTGGCAGAAGCAACTTACCATGCAATGCTTGAGGCAC
CAGTCGGTATGACCATGTCTGTGGAACCTTCAGTGATCAAATTCACCAATGGCGGTAGTAGAAGTGTGACATTTAAGGTG
ACATTCACCACAAGACAGAGAGTGCAAGGTGGCTACACGTTTGGAAGTTTGACATGGCAAGATGGTATCACACACTCTGT
GAGAATTCCTATTGCGGTTCGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis