Browse Element(s) Details


Os.48621.1.S1_at

Description gb:AK120913.1
DB_XREF= gi:37990536
TID=Os.48621.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034G08, full insert sequence.
FL= gb:AK120913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1719011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17150OsAffx.24287.1.S1_at11/112+9826265..9829110Subtilase family protein, expressed
LOC_Os02g17160Os.47463.1.S1_x_at6/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17160Os.14491.2.S1_x_at4/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17170OsAffx.2649.1.S1_at11/112+9836945..9838024hypothetical protein
LOC_Os02g17180OsAffx.24288.1.S1_at11/112+9838335..9839477F-box domain containing protein
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein
LOC_Os02g17210OsAffx.12083.1.S1_at11/112+9867022..9868131F-box domain containing protein
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48621.1.S1_at--408--8571Chr02:9851784..9851808 (25 bp)
TGGTTTTCCTGTCAAGCCCGGTGGA
LOC_Os02g17190
Os.48621.1.S1_at--746--1591Chr02:9851896..9851920 (25 bp)
AGCTGTACTCCAAGGTTTTTCACCA
LOC_Os02g17190
Os.48621.1.S1_at--274--7871Chr02:9851909..9851933 (25 bp)
GGTTTTTCACCAGAAGTTCCATCAG
LOC_Os02g17190
Os.48621.1.S1_at--239--2331Chr02:9851941..9851965 (25 bp)
AAAGATTGTCGAACCACCACTGGCT
LOC_Os02g17190
Os.48621.1.S1_at--928--2171Chr02:9852020..9852044 (25 bp)
ACACTGGAGCAACATCTGGCGAATG
LOC_Os02g17190
Os.48621.1.S1_at--455--3911Chr02:9852035..9852059 (25 bp)
CTGGCGAATGTCTCAGATCTTCTAG
LOC_Os02g17190
Os.48621.1.S1_at--962--6231Chr02:9852074..9852098 (25 bp)
GATGGCTTGATGATCATTCCTCCTT
LOC_Os02g17190
Os.48621.1.S1_at--1039--3411Chr02:9852146..9852170 (25 bp)
CAGACAAGTAGACCGCGCTGGTATT
LOC_Os02g17190
Os.48621.1.S1_at--763--2751Chr02:9852199..9852223 (25 bp)
AAGAAAACCGCTATGCTGCTGTGCA
LOC_Os02g17190
Os.48621.1.S1_at--115--6711Chr02:9852244..9852268 (25 bp)
GTTCCTGTCTAATTATCTTTGCATT
LOC_Os02g17190
Os.48621.1.S1_at--127--6731Chr02:9852306..9852330 (25 bp)
GTTCTGTTAGCAATGTTGTCCTGTG
LOC_Os02g17190
Target Sequence 
TGGTTTTCCTGTCAAGCCCGGTGGAGCTCAAGGTGTCTGCTGTGGCAGAATCTGAAAGGCACTTACAGGAAAGTAAAGAA
ATGAGTCCAGAAGTTNACATCGTTTCNCCACCAGCTGTACTCCAAGGTTTTTCACCAGAAGTTCCATCAGTATGTGNAAA
GATTGTCGAACCACCACTGGCTGATTTCAACCAAGCTNAGAATGTTTGTTCTTTGGAGACCTCCTCAGACCCATGCACAC
TGGAGCAACATCTGGCGAATGTCTCAGATCTTCTAGACATGTCATACATCGATGGCTTGATGATCATTCCTCCTTCAGGT
TGCCCATACGATGGTGATTTCATATGAGACATGAAAGGGGCACAGACAAGTAGACCGCGCTGGTATTGCACNAGCAATCC
ATTGNAAAAAAAAACAAGAAAACCGCTATGCTGCTGTGCATCTTTTGATGAACTTACATAGTTCCTGTCTAATTATCTTT
GCATTAGATCAAGAACCTATCTCGAAAAGAGCTAGCAATGTTGTTCTGTTAGCAATGTTGTCCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis