Browse Element(s) Details


OsAffx.12082.1.S1_at

Description tigr:9630.m01608
TID=OsAffx.12082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1720011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17150OsAffx.24287.1.S1_at11/112+9826265..9829110Subtilase family protein, expressed
LOC_Os02g17160Os.47463.1.S1_x_at6/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17160Os.14491.2.S1_x_at4/112+9831579..9833015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g17170OsAffx.2649.1.S1_at11/112+9836945..9838024hypothetical protein
LOC_Os02g17180OsAffx.24288.1.S1_at11/112+9838335..9839477F-box domain containing protein
LOC_Os02g17190Os.48621.1.S1_at11/112+9848226..9852381Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g17200OsAffx.12082.1.S1_at11/112+9853307..9854419hypothetical protein
LOC_Os02g17210OsAffx.12083.1.S1_at11/112+9867022..9868131F-box domain containing protein
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12082.1.S1_at--998--5311Chr02:9853883..9853907 (25 bp)
GAAGAGGCCGAAGACGGTTCATCGT
LOC_Os02g17200
OsAffx.12082.1.S1_at--989--8391Chr02:9853878..9853902 (25 bp)
GGCCGAAGACGGTTCATCGTCAACA
LOC_Os02g17200
OsAffx.12082.1.S1_at--215--1871Chr02:9853870..9853894 (25 bp)
ACGGTTCATCGTCAACAAAACAAAT
LOC_Os02g17200
OsAffx.12082.1.S1_at--226--1671Chr02:9853808..9853832 (25 bp)
AGCCCGATTCGCTGCCATACCATTG
LOC_Os02g17200
OsAffx.12082.1.S1_at--39--9091Chr02:9853758..9853782 (25 bp)
TGCTCGCCACGCAAAAGCGGGTGGA
LOC_Os02g17200
OsAffx.12082.1.S1_at--1121--2831Chr02:9853720..9853744 (25 bp)
AAGTACGCCGGCCTGATCGCCAAGT
LOC_Os02g17200
OsAffx.12082.1.S1_at--775--8851Chr02:9853707..9853731 (25 bp)
TGATCGCCAAGTCCCAGGACGTGAT
LOC_Os02g17200
OsAffx.12082.1.S1_at--50--3511Chr02:9853484..9853508 (25 bp)
CATGGAGGCGATACGCCGCGAGCAC
LOC_Os02g17200
OsAffx.12082.1.S1_at--10--4611Chr02:9853437..9853461 (25 bp)
GCGACATCGAGTACGCGGTGAGCCC
LOC_Os02g17200
OsAffx.12082.1.S1_at--139--7751Chr02:9853352..9853376 (25 bp)
GGTGTCGAGCATGCTCGGGCTCCTA
LOC_Os02g17200
OsAffx.12082.1.S1_at--238--9431Chr02:9853338..9853362 (25 bp)
TCGGGCTCCTACTGCGACCACAAGA
LOC_Os02g17200
Target Sequence 
GAAGAGGCCGAAGACGGTTCATCGTCAACAAAACAAATCGCCATTGCCGCCGCCGCCGCCGAAGCGCGCCGCCCGAGCCC
GATTCGCTGCCATACCATTGCCGCCGCCGCCCAGCAACGAGGAGGTGCTCGCCACGCAAAAGCGGGTGGACGAGATGCGC
AAGAAGTACGCCGGCCTGATCGCCAAGTCCCAGGACGTGATCGGCGTCGCCCACCGCGAGGCCGCCGTCCCGGAGAAGGC
GAAGGGGCGCCGAGCCAACCTCGCCGCCGTCGCGGCCGCCGCGGAGGACGAGCTCCTCCTCCTGCGGCAGCGGTGCCGGG
GGCGAGACGCCGAGAGGGCGAAGGCTCGGGAGGCGCTGCGGGAGATGGAGAGGGAGGCGCGGCGCGCCGGGCTGTTCGCC
ATGGAGGCGATACGCCGCGAGCACCTGCGGGCGCTCGACATCACCCGCGACATCGAGTACGCGGTGAGCCCGGAGTGCCA
CCGCGGCGAGGACGGCGTGCTCCGCGTCATCGCGCCGTCGCGCCACAGCCCGGTGTCGAGCATGCTCGGGCTCCTACTGC
GACCACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis